Scheffersomyces stipitis: PICST_63621
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Entry
PICST_63621 CDS
T01023
Name
(RefSeq) predicted protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pic
Scheffersomyces stipitis
Pathway
pic03018
RNA degradation
pic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PICST_63621
09123 Folding, sorting and degradation
03018 RNA degradation
PICST_63621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pic03019
]
PICST_63621
03041 Spliceosome [BR:
pic03041
]
PICST_63621
Messenger RNA biogenesis [BR:
pic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PICST_63621
mRNA degradation factors
5'-3' decay
Lsm complex
PICST_63621
Spliceosome [BR:
pic03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PICST_63621
Complex C
U2 snRNP components
PICST_63621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq_1
Motif
Other DBs
NCBI-GeneID:
4840526
NCBI-ProteinID:
XP_001386093
JGI:
63621
UniProt:
A3LYZ0
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All DBs
Position
7:398110..398376
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AA seq
88 aa
AA seq
DB search
MSTIRTESQQQEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSA
GDEETVVKKTEMVFVRGDSVILISPISE
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactatcagaacagaactgcagcagcaggaaccgttagacttgatcagattccag
ttggacgagtttgtgcttgtcaagttgagaggagctcgtgaaatgaaaggaagacttcag
ggctacgattcccattgcaacatggtgttgagcgaagccgaagagtatatttattctgct
ggagacgaagagactgtagttaagaaaacagagatggtttttgtcagaggagactcggtc
atcttgataagtcctatttctgaatga
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