KEGG   Scheffersomyces stipitis: PICST_63621
Entry
PICST_63621       CDS       T01023                                 
Name
(RefSeq) predicted protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
pic  Scheffersomyces stipitis
Pathway
pic03018  RNA degradation
pic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PICST_63621
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PICST_63621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pic03019]
    PICST_63621
   03041 Spliceosome [BR:pic03041]
    PICST_63621
Messenger RNA biogenesis [BR:pic03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PICST_63621
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PICST_63621
Spliceosome [BR:pic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PICST_63621
 Complex C
  U2 snRNP components
    PICST_63621
SSDB
Motif
Pfam: LSM Hfq_1
Other DBs
NCBI-GeneID: 4840526
NCBI-ProteinID: XP_001386093
JGI: 63621
UniProt: A3LYZ0
LinkDB
Position
7:398110..398376
AA seq 88 aa
MSTIRTESQQQEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSA
GDEETVVKKTEMVFVRGDSVILISPISE
NT seq 267 nt   +upstreamnt  +downstreamnt
atgtcaactatcagaacagaactgcagcagcaggaaccgttagacttgatcagattccag
ttggacgagtttgtgcttgtcaagttgagaggagctcgtgaaatgaaaggaagacttcag
ggctacgattcccattgcaacatggtgttgagcgaagccgaagagtatatttattctgct
ggagacgaagagactgtagttaagaaaacagagatggtttttgtcagaggagactcggtc
atcttgataagtcctatttctgaatga

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