Pseudomonas iranensis: HU724_009755
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Entry
HU724_009755 CDS
T07894
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pie
Pseudomonas iranensis
Pathway
pie03030
DNA replication
pie03410
Base excision repair
pie03420
Nucleotide excision repair
pie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU724_009755 (ligA)
03410 Base excision repair
HU724_009755 (ligA)
03420 Nucleotide excision repair
HU724_009755 (ligA)
03430 Mismatch repair
HU724_009755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pie03032
]
HU724_009755 (ligA)
03400 DNA repair and recombination proteins [BR:
pie03400
]
HU724_009755 (ligA)
Enzymes [BR:
pie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU724_009755 (ligA)
DNA replication proteins [BR:
pie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU724_009755 (ligA)
DNA repair and recombination proteins [BR:
pie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU724_009755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU724_009755 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU724_009755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU724_009755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXI24542
LinkDB
All DBs
Position
2193414..2195771
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSMALTAFTQVRHEIPMLSLGNAFEESDMREFDRRVTEGLDVPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DIADTHIGNLKQLQKWGMPISHELKLAKGIDECLEYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVIERRPDDARPVAIPESCPVCGS
HVERTQLVKRSKGKETFSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAEVSSNKLLKAIEDSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPHVLTYLPDVGLEVAHEIHSFFEDAHNQQVISELLGHGL
QIQDQGELGAEFAASTTLGGLLDKLHIPFVGPGGAQKLADRFGSLEAVMNADWLDMRQAL
PEKQANSVREFFASPEHRQLAERAEQQLRDFGMHWQSEKKVVEGLPLSGETWVLTGKVEL
MSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKT
HGVAV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggaccagcacaactac
cgctaccacgttctcgacgagccgagcattcccgatgccgagtacgatcgcttgtttcac
gagctcaaggcactggaagcggccaacccggaactgatcaccagcgattcgccgacccag
cgcgtcggcagcatggcgttgaccgcgttcactcaggtgcgtcacgaaattccgatgctc
agcctcggcaacgcctttgaagaatccgacatgcgcgagttcgatcgccgcgtcactgaa
ggcctcgacgtgccggccggcgatctgtttggtggcggcgcggcggtggaatacagctgc
gagccgaagctcgatggcctggcggtcagcttgctgtatcaggatggtctgctggtgcgc
ggcgccacccggggcgatggcaccaccggcgaagatatcagcgtcaacgtgcgcaccgtg
cgcaatattccgctgaagctgcacggcgaaggctggccggcgacgctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgcctcaatgcttcgcaactggaaatcggc
ggcaagaccttcgccaacccgcgcaacgcggcagcaggcagcctgcgccagctcgactcg
aagatcaccgccaatcgtccgctggaattctgctgctatggcatcggtcaggtgtctcac
gatatcgccgacacccacatcggtaacctcaagcagttgcagaagtggggcatgccgatc
agtcacgaactgaagctggccaagggcattgatgagtgcctggagtattaccgcgacatc
ggcgagcgccgtaactcgctggcctatgaaatcgatggcgtggtgttcaaggtcaacagc
attgccgaccagcgtgaactgggcttccgcgcccgcgagccgcgttgggcgattgcgcac
aaattcccggcgatggaagaacttaccgagctgctcgacgtggagttccaggtcggccgc
accggtgcggtgactccggtggcgcgtctgaaaccggtgaaggtcgccggcgtcaccgtg
gccaacgccacgttgcacaacatggacgaagtcgcgcggctgggcctgatgatcggcgac
acggtgatcatccgccgcgccggtgatgtgattccgcaagtggtgcaggtagtcatcgag
cgtcgccccgatgacgcgcgcccggtggccattcctgaaagctgcccggtgtgcggctcc
cacgttgaacgcacgcaactggtcaagcgcagcaagggcaaggaaaccttcagcgaaggt
gcggtgtatcgctgcgtcggccgactggcctgtggtgcgcaactgaaacaggcgatcatt
cacttcgtctcgcgccgggccatggacatcgaaggcttgggcgacaagagcgtcgagcaa
ctggtcgacgaaggtctggtcagctcgccagccgatctgtatgcgctgaagttcgacgac
atcgtcgatctggaaggcttcgccgaggtatcgagcaacaagctgctcaaagccattgaa
gacagcaagcaaccgagcctggcacgtttcatctatgccctcggcattcccgatgtcggc
gaagagacggcgaaggtgctggcgcgttcgctgggttcgctggaacgcgtgcaacaggcc
ttgccgcatgtgctgacctacctgccagatgtcggcctggaagtggcgcacgagatccac
agtttctttgaggatgcgcacaaccagcaggtcatcagcgaattgctcggccatggtttg
cagattcaggatcaaggcgagttgggcgccgaattcgccgccagtaccaccctgggcggc
ttgctcgacaaactgcacattcccttcgtcggccccggtggtgcgcagaaactcgccgat
cgcttcggttcgctggaagcggtgatgaacgctgactggctggacatgcgccaggcattg
ccggagaagcaggccaactcggtgcgcgagttcttcgcctcgcctgagcatcggcaactg
gccgagcgggccgagcagcagctgcgcgatttcggcatgcattggcagagcgagaaaaaa
gtcgtcgaaggtctgccgctgtccggcgaaacctgggtgctgaccggcaaggtcgagttg
atgagccgggatgtggccaaggagcacctggaaagcctgggtgccaaggtcgccggttcg
gtgtcggcgaaaacccattgcgtggtcgcaggcccgggtgccgggtcgaaactgaccaag
gccaacgagctgggcgtgaaggtcatggacgaagaagcgtttatcgccttcctcaaaacc
cacggcgtcgctgtctga
DBGET
integrated database retrieval system
