Pigmentibacter sp. JX0631: QEJ31_08180
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Entry
QEJ31_08180 CDS
T08995
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pij
Pigmentibacter sp. JX0631
Pathway
pij03030
DNA replication
pij03410
Base excision repair
pij03420
Nucleotide excision repair
pij03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QEJ31_08180 (ligA)
03410 Base excision repair
QEJ31_08180 (ligA)
03420 Nucleotide excision repair
QEJ31_08180 (ligA)
03430 Mismatch repair
QEJ31_08180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pij03032
]
QEJ31_08180 (ligA)
03400 DNA repair and recombination proteins [BR:
pij03400
]
QEJ31_08180 (ligA)
Enzymes [BR:
pij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QEJ31_08180 (ligA)
DNA replication proteins [BR:
pij03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QEJ31_08180 (ligA)
DNA repair and recombination proteins [BR:
pij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QEJ31_08180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QEJ31_08180 (ligA)
MMR (mismatch excision repair)
DNA ligase
QEJ31_08180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QEJ31_08180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
PTCB-BRCT
HHH_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WGL58517
UniProt:
A0AA95JWD2
LinkDB
All DBs
Position
1871881..1873851
Genome browser
AA seq
656 aa
AA seq
DB search
MVKNSSKNRYVEELASKILQHKKLYYLGKSSISDIEYDALENELKKLAPNHPILSFVGYQ
FDEISNKVSHEVPMLSLAKTYSVDDLYDFIQKSFCVAMDKIDGMALSLEYDFSGKLFRAS
TRGNGKAGENVTEHICHITNIPKILNISSKDTNYKFEIRGEVYFPLSDFNGFSDRFDSFR
NAVPGTLGRKEVEEALDVLRVLRFCVYDVLIFKNNNPLSAKEFFTYINKNNNYLDKIKYS
QELGFTDNTNILEKIDQINNVNELQEYITTWYKKDRNYQIDGIVFRYGDEILWENFGNTA
HHPRGSIAFKQAGETAETEILAIEENVGRSGKITFRAKLKTVELSGAKISYATLHNAEFI
EEGNYAVGAKVEIIRSGEVIPAIIRLIEPASRAFNLPEFCKCGSKLTRQGPDLMCLDNPV
CNFKDQESLVYFVSALDIMGVSDKIVLKIRDAGLVQEPADFYKLTEEDLLQIEGFAKKSS
ENVVKAIQNARKIPLAKFLTSLGLKRGGAVKCQEVARKFESLENVLKIDAEDLKVEKGWA
DKSAEDFIESLKNKRKIIINLLKYVEVLNDESNKKISNQNSHPFFGKNICITGSLSRPRD
EYKFMLENVGAKLVSSVSSKTDLLVCNESSSSNKYKDAIKFGIKIITEEEFLRNFN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggttaaaaattcaagtaaaaatagatatgttgaagaattagcttcaaaaattttacaa
cataaaaagttatattatttaggaaaaagttcaatatctgatattgagtatgatgcctta
gaaaatgaattaaaaaaacttgctccaaatcatcccattttatcatttgttgggtatcaa
tttgatgaaatatctaataaagtttcccatgaagttcctatgctttctctagcaaaaact
tattctgtagatgatttatatgattttatacaaaaaagtttttgtgtggcgatggataaa
atagatggtatggcattgtcgcttgaatatgatttttctggaaaattatttcgggcttca
acaagaggaaatggtaaggctggggaaaatgtaacagagcatatttgtcacataactaat
attccaaaaatattaaatatttctagtaaagatacgaattataaatttgagattaggggt
gaagtgtattttcctctctcagattttaatggatttagtgataggtttgatagttttcgc
aatgcagtgccagggacacttggtagaaaagaagttgaagaagctcttgatgttttaaga
gtgctgcgtttttgtgtttatgatgtattaatttttaaaaataataatcctttaagtgca
aaagaattttttacttatataaataaaaataataactatttagataaaataaaatatagt
caagaattaggatttacagataatacaaatatccttgaaaaaattgatcaaataaataac
gtaaatgaattacaagaatatataactacatggtacaaaaaggatagaaattatcagatt
gatggtattgtttttcgatatggtgatgaaattttatgggaaaactttggtaacactgcg
catcatccaagagggagtattgcttttaaacaggcaggcgaaaccgctgaaacagaaatt
ctagctattgaagaaaatgttgggcgaagtgggaaaattacattcagagcaaaactaaaa
actgttgaattgtctggagcgaaaatttcatatgcaacacttcataatgctgaatttatt
gaagaagggaattatgcagtaggtgcaaaagtagaaattattcgtagcggagaagttata
cctgctataattcggttgatagagccagcttcgagagcttttaatttaccagaattttgt
aaatgtggttctaaattaactagacaaggccctgatctaatgtgcctcgataatcctgtc
tgtaattttaaagatcaagaaagtctagtttattttgtatctgcgttagatatcatggga
gtttcagataaaatagttttaaaaatcagagatgctggtttagttcaagaacctgcagat
ttttataaattaacagaagaagatcttcttcaaattgaaggatttgcaaaaaaatcttct
gaaaatgttgttaaggcaatacaaaatgctagaaaaattcctttagctaaatttcttacc
tctttaggtttaaaacgtggtggagctgttaaatgtcaagaagtagctagaaaatttgaa
tctttagaaaatgtcttaaaaattgacgcagaagatttaaaagttgaaaaaggctgggca
gataaatctgcggaagattttatagaatctttaaaaaataaacggaaaatcattattaac
ttactaaaatatgttgaagtattgaatgatgagtcgaataaaaaaataagtaatcaaaat
tctcacccattttttgggaaaaacatttgcattacagggagtttatcaagaccaagagat
gaatataaatttatgcttgaaaatgttggagcaaaattagtttcatcagttagttccaaa
acagatcttttagtttgtaatgaaagttcaagttcaaataaatataaagacgctataaaa
tttggaattaaaattataacagaagaagaatttttaaggaattttaattga
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