Pirellula sp. SH-Sr6A: VN12_01370
Help
Entry
VN12_01370 CDS
T04360
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03030
DNA replication
pir03410
Base excision repair
pir03420
Nucleotide excision repair
pir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VN12_01370 (ligA)
03410 Base excision repair
VN12_01370 (ligA)
03420 Nucleotide excision repair
VN12_01370 (ligA)
03430 Mismatch repair
VN12_01370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pir03032
]
VN12_01370 (ligA)
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_01370 (ligA)
Enzymes [BR:
pir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VN12_01370 (ligA)
DNA replication proteins [BR:
pir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VN12_01370 (ligA)
DNA repair and recombination proteins [BR:
pir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VN12_01370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VN12_01370 (ligA)
MMR (mismatch excision repair)
DNA ligase
VN12_01370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VN12_01370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
RNA_pol_A_CTD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMV30735
UniProt:
A0A142XV22
LinkDB
All DBs
Position
406950..408971
Genome browser
AA seq
673 aa
AA seq
DB search
MVHLKAAERIEWLSDQIRQHDYYYYVLAAPTITDLEYDRLLRELQELEALYPEMASPDSP
TKRLGDRPVDGLMQVAHRIPMLSIENTYTEQELRDFFQRTEKLLPDERIEWVVELKVDGV
AASIRYDKGLLTQAVTRGNGEVGDDITHNIRTIRGLPQRLVGESIPEWLEVRGEVYMRNS
DLVALNEERVKAGEPEFKNPRNVTAGSIRLLDPKLCAQRKLRFLCHGIGYCDGIQEQEHM
AFLERVRLMGIPITPGVKVFTDKDELIQHCNSIVETLHELDFEVDGIVIKVNSLEQRETL
GATSKSPRWVIAYKIEKYEAVTRLLEIRTQIGKTGTITPVAELEPVQLAGTTVARASLHN
AEEIERKDVRVGDWVVVEKAGKIIPHIVRVERHRREHELPLFQFPTHCPECGSVLQKDPA
GVYIRCVSKQCPAQWRQRLRYFASRDCMDIEGLGEKLVNQLVDTGLVLSLGDLYRLKLDD
LLQLERMGKKSAESLLAGIATSKTRGLSRVLNAISIRHVGQRVAQVLARRFGTIDALIAA
ELTTISSTPEIGPIIAASVYEFLRSPEGTELIDQLREAGVSLATTEEDTIDASGLLADKT
IVVTGTLSRFSRDEIERRIIKLGGKAASSVSKKTHFVVAGEAAGSKLEKAQSLGIPVLTE
TEFIEQFLSDSPS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggtccatctaaaagctgctgaacgcatagagtggctgagcgatcaaatccgccagcac
gattactactattacgttctcgcggcaccgaccattacggacctggagtacgaccgactc
cttcgcgaactgcaggagttggaggccctctatccagagatggccagtcccgacagcccg
accaaacgattgggagaccgtcccgtcgatggcttgatgcaggtcgcacatcgaataccg
atgctctccattgagaacacctacaccgaacaagagcttcgtgacttttttcaaaggacc
gaaaagcttctacctgacgaacgaatcgaatgggtcgtagagctcaaggtggatggcgtc
gcggcatcgatacggtacgacaagggactcctcacccaagccgtcacgcgaggaaacggc
gaagtcggggacgatatcacgcacaacattagaaccattcgtggcctgccccaacgtctc
gtcggagagtccatcccggaatggttggaggtgcggggcgaagtctacatgcgcaactcc
gatctggtcgcactcaatgaagagagagtcaaagcgggcgaaccggagttcaaaaatcct
cgcaacgtgaccgctgggtcgattcggctcttggatcccaaactttgcgctcagcggaag
ctgcgattcctttgtcatggtatcggctattgcgacggtatccaggagcaggaacacatg
gcgtttttggagcgagtccgcttgatgggaattcccatcactccaggcgtgaaggttttt
acagacaaagacgagctgatccaacattgcaacagcattgtcgaaacgctgcatgaactc
gacttcgaggtcgacgggatcgtcatcaaagtgaattcgcttgaacaacgcgaaacactt
ggagctacgagcaaatcgcctcgatgggtgatcgcttacaaaattgagaagtacgaagct
gttacaaggttgctagagatcagaacccagatcggaaaaacagggacgattacgcctgtc
gccgaattggaaccggtacaactggcaggcaccaccgtcgcgcgtgcgtccctccacaat
gcggaagagatcgagagaaaagacgttcgggttggcgattgggtcgtcgtcgaaaaggct
ggcaagatcatccctcacatcgtgagagtcgaacgtcatcgtcgtgagcatgagctacct
ctgtttcaatttccaacccactgtcctgagtgcgggtcggttcttcaaaaggatcctgcc
ggggtctatatccgttgcgtctcgaaacaatgcccggcgcagtggcgtcaacgattgcga
tactttgcgagccgggattgcatggacattgaaggcttgggggagaagctggtcaaccaa
ttggtcgacaccggattggtgctcagtctcggtgacctgtatcgactgaagctcgatgat
cttctccaactagagcgaatgggcaagaaatcggctgagagtttgctagcgggaatcgca
acaagcaagacgcgagggctcagtcgcgtcctgaatgcaatttctattcggcatgtcgga
caacgagtcgcgcaagtcctcgctagacgttttggcacgatcgatgccctcatcgcagcg
gaattgaccaccatctcctccacacccgaaatcggcccgatcatcgctgcgagtgtttat
gagtttctacgtagcccagaaggaaccgagctcatcgatcaactacgcgaagctggcgtc
tcattggcaaccacggaggaggacaccattgacgcgtctggtctactcgccgacaaaacg
atcgtcgtaacgggtacactgagccgcttttcaagagacgagatcgaacgtcggatcatc
aagctcggtggcaaagctgcgagcagtgtttccaaaaaaacccatttcgtcgtcgctggg
gaagctgcgggcagcaagcttgaaaaggctcagtcgctcggcattcctgttttgactgag
acggaatttatcgaacaattcctgagcgattccccttcctaa
DBGET
integrated database retrieval system
