Pirellula sp. SH-Sr6A: VN12_14365
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Entry
VN12_14365 CDS
T04360
Symbol
nth
Name
(GenBank) Endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
pir
Pirellula sp. SH-Sr6A
Pathway
pir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VN12_14365 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pir03400
]
VN12_14365 (nth)
Enzymes [BR:
pir01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VN12_14365 (nth)
DNA repair and recombination proteins [BR:
pir03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VN12_14365 (nth)
Prokaryotic type
VN12_14365 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
HHH_5
Lant_dehydr_N
SHS2_Rpb7-N
TPR_6
Rota_NS35_C
DUF2400
Motif
Other DBs
NCBI-ProteinID:
AMV33307
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All DBs
Position
3534654..3535304
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AA seq
216 aa
AA seq
DB search
MLRKDRAKTVLERLGELYPETSIPLDHSNPYTLLVAVLLSAQCTDKMVNRVTPSLWKLAD
NPWDMSRRSVEEIRAIIQPCGLSPQKSKAIRELSQILVEKYEGAVPESFELLEELPGVGH
KTASVVMSQGFGHPAFPVDTHIHRLAQRWGLTDGRSVEQTERDLKKLFPQESWNQLHLQI
IFYGREHCTARGCNGTVCGICKELYPNRKKPVATRK
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgctacgcaaggaccgcgcgaaaacggtattggaacgtcttggtgagttgtaccccgag
acctcgattccgctggaccattccaatccgtatacgctcctggtcgcggtattgctcagc
gcccagtgcaccgacaagatggtcaatcgggtaacaccgagcttgtggaagctcgctgat
aacccttgggacatgagtcgaagatcggtcgaggagatccgagcgatcatccagccgtgc
ggattgagcccgcagaaatcgaaagcgattcgggagctctcgcagatcctggtcgaaaaa
tacgaaggggcggttcccgagtccttcgagttgctggaagagttgcccggtgtggggcac
aaaaccgcgtccgtggtgatgagccaaggtttcgggcaccccgccttcccggtcgatacg
catattcatcgattggcccagcggtggggccttaccgatggcagatcggtggagcagacc
gagcgagatttgaaaaaactctttccgcaggagtcgtggaatcaacttcatttgcagatc
attttctatggacgcgagcattgcacggcccgcgggtgcaatggaacggtttgcgggatt
tgcaaagaactctacccaaatcgaaagaaacctgtagcgacccgaaagtag
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