Polynucleobacter ibericus: AOC20_02600
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Entry
AOC20_02600 CDS
T09789
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
piu
Polynucleobacter ibericus
Pathway
piu03030
DNA replication
piu03410
Base excision repair
piu03420
Nucleotide excision repair
piu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
piu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOC20_02600 (ligA)
03410 Base excision repair
AOC20_02600 (ligA)
03420 Nucleotide excision repair
AOC20_02600 (ligA)
03430 Mismatch repair
AOC20_02600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
piu03032
]
AOC20_02600 (ligA)
03400 DNA repair and recombination proteins [BR:
piu03400
]
AOC20_02600 (ligA)
Enzymes [BR:
piu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOC20_02600 (ligA)
DNA replication proteins [BR:
piu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOC20_02600 (ligA)
DNA repair and recombination proteins [BR:
piu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOC20_02600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOC20_02600 (ligA)
MMR (mismatch excision repair)
DNA ligase
AOC20_02600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOC20_02600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QWE09120
LinkDB
All DBs
Position
486312..488327
Genome browser
AA seq
671 aa
AA seq
DB search
MSSTSPTNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLEIEAAHPEWITP
ESLSQRVGGVALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRCREALHSDHVAYAGELKF
DGLAISLRYENGSLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKDIPKVLEVRGEVFM
YLKDFEKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWL
PKTHEELLNAYADLGLPVCSERKVLHSVKEILAFYNEIGAKRDSLPYDIDGVVYKVNSFA
EQAKLGFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPENTQEFQMPTRCPVCDSHI
ERLADEAVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDNNLVRTPADLY
RLGFTALANLERMGEKSSDNLIQAINQSRNTTLARFIFALGIRHVGETAAKDLANHYRSM
HALMDANLEDLLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMQLAVEEKVISTAVA
GKTFVLTGAFPTMTRDQAKDLLEKAGAKVAGSVSKKTDYVVAGADAGSKLTKAEELGIPV
IDEAAMLDLLN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtccactagtccgacaaatttagcggagcgttacgcatttctacaggcagagctt
gctcgtctagagcatgcttactacgttctggataatcctcttcttcccgatattgaatat
gaccgtctctacagagaattgcttgagattgaggctgctcatcctgaatggatcactcca
gaatctttatctcagcgcgtaggtggggttgcattaaaagaatttgattcggttactcat
gcagtaccaatgctctctctaaataatgcatttgaagatgctgagcttattgcttttgat
cgtcgttgccgtgaggcacttcattcagatcatgttgcttatgcaggtgaattgaagttt
gatggcctagcaatttctcttcgctatgagaatggttcattggtaacggcagctactcgt
ggtgatggtgccagcggtgaagatgttactgccaatatcaaaacgattcgagccattcca
ctcaaactcactggcaaagatattccgaaggttttagaggtgcgtggtgaggtctttatg
tacctcaaggacttcgaaaaaatgaatcgccaagcagcagaattgggtgagaaagaattt
gccaacccccgtaatgctgcagcaggtagccttcgtcaattagattcgaaaatcactgct
aagagaccactttctttctttgcttatggattaggcgccctagagccgcagtcttggcta
cccaaaactcatgaagagttgcttaatgcctatgcagatttgggtttaccagtgtgctct
gagcgcaaagtgttgcactcagtaaaagagatcttagctttttataacgagattggtgcc
aagcgggattcactgccgtatgacattgatggcgttgtctataaggtgaactcatttgcc
gagcaagctaagttaggctttgtctcaagagcccctagatttgcacttgcccataaatat
cctgctcaagaagcactcactacagtgttgggtattgatgtgcaagtagggcgcacagga
gcaattactccggtagcgcgactggctccggtagaggttggtggagtcactgtcactaat
gctacgttacacaacgaagatgaagttaagcgcaaggatgtgcgcattggcgatacggta
tcagtcagaagggcgggggatgtaattcctgaggtggtatcagtgatcaaggatcgtcgt
cctgaaaacacgcaagagtttcaaatgccaacccgctgtcctgtgtgtgactctcatatt
gagcgtctggcagatgaggcggtagctcgttgtagtggtggactcttctgcggtgctcag
cgcaaacaggctttaattcactttgctcacagaagagctctagatattgagggtttgggc
gaaaagattgttgatcagttggtagacaacaacctagttagaactccagcagatctctac
agattaggcttcacagcgctagccaatcttgaacgtatgggcgagaagtcatcagataac
ctcattcaagcaattaaccaatccagaaatactacgctagcaagatttatatttgccttg
ggtattcgtcatgtaggtgaaaccgcggcgaaagatttggccaatcattaccggtccatg
catgcattaatggatgcaaatctcgaagacctgttaacagtaaaagatgttggccctgta
gttgcagactcgatcacgagctttatgcaagaggctcacaatcgtgaagtaattgagcaa
ctgctggcatccggaatgcagctcgctgtagaagaaaaagtcattagcactgcagtagct
ggtaaaacttttgttctgacaggtgcattcccaacgatgacaagagatcaagctaaagat
cttctcgaaaaagcaggcgctaaagttgcaggatctgtctccaagaaaactgattatgtg
gttgccggtgcggatgctggtagcaagctaactaaagcagaagaattaggtattccggta
attgatgaagcggcgatgctcgatttgctaaattaa
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