Pseudomonas inefficax: RIN61_03375
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Entry
RIN61_03375 CDS
T09811
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pix
Pseudomonas inefficax
Pathway
pix03030
DNA replication
pix03410
Base excision repair
pix03420
Nucleotide excision repair
pix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN61_03375 (ligA)
03410 Base excision repair
RIN61_03375 (ligA)
03420 Nucleotide excision repair
RIN61_03375 (ligA)
03430 Mismatch repair
RIN61_03375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pix03032
]
RIN61_03375 (ligA)
03400 DNA repair and recombination proteins [BR:
pix03400
]
RIN61_03375 (ligA)
Enzymes [BR:
pix01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIN61_03375 (ligA)
DNA replication proteins [BR:
pix03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN61_03375 (ligA)
DNA repair and recombination proteins [BR:
pix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIN61_03375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN61_03375 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIN61_03375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIN61_03375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WNN40362
LinkDB
All DBs
Position
complement(753985..756315)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGEALPAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAVDYSCEPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGQGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFDQIVGLEGFAEVSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLEKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgtgccgagctcgaccagcacaactaccgc
tactacgtgctcgatgagccaagcgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgcttgaagccgaacacccgcacctggtgacccctgactcgcccacccagcgc
gttggtggcgaagccctgcccgcgttcagccaggtgcgccacgaagtgcccatgctcagc
ctgggcaacgctttcgaagaggccgacctgcgtgaattcggccgccgggtggtagacggg
ctcgatcagcccggtgcggtcgactacagctgcgagcccaagctcgacggccttgcggtg
agcttgttgtaccgcgacggccagctggtgcagggcgccacccgtggcgacggcaccacc
ggcgaagacatcagtgccaatgtgcgcaccgtgcgcaacatcccgctcaaactgcaaggc
caggggtggccggcggtgctggaggtgcgcggcgaggtgtacatgagcaaggccggtttc
gaccggctcaacgccgcccaggccgaagccggcggcaagaccttcgccaacccgcgcaac
gccgcagccggcagcctgcgtcagctggattcgaaaatcaccgccagccgcccgttggag
ttctgctgctatggcgtcggccaggtgtccgcgagcatcggcgacagccacatcggcatc
ctcgagcagctcaaggcctggggcctgccgatcagtcgcgaactcaagcatgccgccggc
atcgaagaatgcctggcctactaccgcgacatcggcgagcgacgcaacagcctgccgtac
gaaatcgacggcgtggtgttcaaggtcaacagcctggccgcccagcgcgaactgggcttc
cgcgcacgtgagccgcgctgggcgattgcccataagttcccggccatggaagagctgacc
gaagtgctggatgtcgagtttcaggtcggccgcactggtgcggtaacgcctgtggcacga
ctgaagccggtcaaggtagccggtgtgaccgtgtccaacgccaccctgcacaacatggac
gagatcgctcgcctgggcctgcgcattggcgacacggtgatcatccgccgcgccggtgac
gtgattccgcaggtgatgcaggtggtgctggagcggcgcccggaagatgcgcgcccggtg
caggtgccgagtgaatgcccggtatgcggctcgcaggtcgagcgtacccaactggtcaag
cgtagcaagggcaaggaaaccaccagcgagggcgcggtgtaccgctgcgtcggtcgcctg
gcctgtggcgcccagctcaagcaggcgatcatccactacgtgtcgcgccgcgccatggac
atcgacggcttgggcgagaaaagcgtcgagcagttggtggacgaaggcctgattggctcg
ccggccgacctgtacaagctggagttcgaccagatcgtcggcctggaaggctttgccgag
gtgtccagcaagaagctgctggatgccatcgaagccagcaagcgcccgagcctggcgcgc
ttcatctacgccctgggcatccccgacgtaggcgaggagaccgcgaaggtgctggcccgc
tcgctgggcagcctggcgcgcgtgcagcaggcgctgccgcaggtgcttacctacctgccg
gacatcggcctggaggtggcgtacgagatccacaatttcttcgaggacgagcacaaccgc
aaggtcatcaagcaattgctcgatagcggcatgcaactgcaggacgaaggcgagctggct
gccgaattcgccgccagtaccacgctggccggcatgatcgccaagctcgacattgcctcg
gttggcccgaccggtgccgagaagctcgtggccaagctcgacagcctggagaagatcatt
gccgccgacggtatcgacctgcgccaggccctggcggccaagcaggccgacgccgtgcgc
gagttcttcaaggatgaagccaaccagaaactggcccgggacatcgaggcacagttgctg
gcgttcggcatgcactggagcagcgagaagaaagtggccgaagggctgccgctggccggc
cagacctgggtactgaccggtaccctggagcgcatgagccgcgacatcgccaaggaaaag
ctggaaagcctcggggccaaggtggcgggttcggtttccggcaagacccactgcgtggtg
gcggggccgggggcggggtccaagctggccaaggccagcgagctgggggtcaaagtgctg
gacgaagatgccttcgtcaccttcctgggcgagcagggcatcgctgtctag
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