Pseudomonas inefficax: RIN61_09585 Help Entry RIN61_09585       CDS       T09811                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pix  Pseudomonas inefficax Pathway pix03030   DNA replication pix03410   Base excision repair pix03420   Nucleotide excision repair pix03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pix00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     RIN61_09585 (ligB)    03410 Base excision repair     RIN61_09585 (ligB)    03420 Nucleotide excision repair     RIN61_09585 (ligB)    03430 Mismatch repair     RIN61_09585 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pix03032]     RIN61_09585 (ligB)    03400 DNA repair and recombination proteins [BR:pix03400]     RIN61_09585 (ligB) Enzymes [BR:pix01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      RIN61_09585 (ligB) DNA replication proteins [BR:pix03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      RIN61_09585 (ligB) DNA repair and recombination proteins [BR:pix03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      RIN61_09585 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      RIN61_09585 (ligB)    MMR (mismatch excision repair)     DNA ligase      RIN61_09585 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       RIN61_09585 (ligB) BRITE hierarchy Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase DUF3701 Motif Other DBs NCBI-ProteinID:  WNN41535 LinkDB All DBs Position 2134875..2136575 Genome browser AA seq 566 aa AA seqDB search MPLILLFTLLLTLSSPLARAATCPTWNPQQVEAEVSRLSATLAHWDDHYHRQGVALVPDE LYDQSRQRLTHLQQCFGIATIQSPLASAGGPIPHPVPHTGVDKLADRLAVERWLAGKTDV WVQPKVDGVAVSLIYRQGRLEQLISRGDGVQGHDWSRHIPQLHAINRQLPQAIDLQLQGE LYLRLDAHVQAQAGSANARGTVAGLLARKQLGREQGERIGLFVWDWPRGPEQQAERLAQL AELGFAHSRDYSVAIKTVDDAAHWREYWYRSPLPFATDGVVLRQGGRPPAERWQAKAPYW IAAWKHPYTQALAEVREVRFRIGRTGRVTPVLQVLPVTLDDRRITQVSLGSLARWLKLDI RPGDQVAVSLAGLTIPRLEQVVHRAAERQPVTAPAPGQHHAHSCWQISEGCEDQFIARLT WLSGKQGLALPRTGPGTWRRLVAAGLVTSMTDWLHLDAERLGQVTGISDATAAQLLGTFD QARSRPFAQWLRGLGAPTPTGMQVTGDWLELAARTNLEWQAMPGIGEKRGQQLAGFFAAA EVQAIATQLAKAGIDGFRPDRQSIKQ NT seq 1701 nt NT seq  +upstreamnt  +downstreamnt atgccgttgatactgctgttcaccctgttgttgacactgagttcccccctggcacgtgcc gccacatgccctacctggaacccgcaacaagtcgaggctgaagtaagccgactaagtgcc acgctcgcccactgggacgaccactaccaccgccagggcgttgcgctcgtacccgatgaa ctctacgaccagagccgccaacgcctgacgcacctgcagcaatgctttggcatcgcgacc atccagtctccgctggccagcgctggcgggccgatcccgcatccggtgccacataccggc gtcgacaagctggccgaccgcctggctgtagaacgctggctggccggcaagaccgatgtc tgggtgcagccaaaggtcgatggcgtagcggtctccctcatttaccgacagggccggctg gagcagttgatcagccgcggggacggcgtgcaggggcacgactggagccgccacattccc cagctccacgccatcaatcggcagttgccccaggccatcgacctgcaactgcagggcgaa ctgtacctgcgtctggacgcgcacgtgcaagctcaggcaggcagcgccaacgcacgaggg acggtagccgggctgctggctcgcaagcagctgggtcgtgagcaaggcgagcgcattggc ctgttcgtgtgggactggccgcgcggccccgagcagcaggccgaacgcctcgcgcagctg gcggaactgggctttgcgcacagccgggattacagcgtcgccataaaaacagtggacgat gcggcgcactggcgtgagtactggtaccgctcacccctgcccttcgccaccgatggcgtg gtgctgcgccaaggcggccggccaccggccgagcgctggcaggccaaggccccctattgg atcgcagcgtggaagcacccgtacacacaggccttggccgaagtgcgcgaggtccgcttc cgcatcggccgcaccggtagggtcacaccggtcttgcaggtgctgccggttaccctggat gaccggcgaatcacccaggtgagcctgggctcactggcacgttggctcaagctcgacatc cgtcccggtgaccaggtggccgtcagccttgccgggctgaccatcccacgcctggagcaa gtggtgcaccgcgccgccgagcgccaaccggtgaccgcaccagcgcccggccaacatcat gcccacagttgctggcagatcagcgaaggctgcgaggaccagttcattgcccgcctcacc tggctcagcggcaagcaggggctggccctgccgcgcaccggccctggcacctggcgccgg ctggtggctgccgggctggtgacttcgatgaccgactggctgcatctggacgccgagcgc ttgggccaggtaaccggtatcagtgacgcaacggctgcgcagttgctcggcactttcgac caagcccgctcacggccctttgcccaatggctgcgcgggctgggcgcgcccacacccacc ggcatgcaggtgacaggcgactggctggagcttgctgcccgcaccaaccttgaatggcaa gccatgcccggtatcggcgaaaagcgcgggcaacagcttgcaggattttttgcggccgcc gaggtgcaagccattgcaacgcagctggccaaggcagggatcgacggcttccggcccgac aggcaaagcatcaagcaatga

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