Pseudomonas izuensis: LAB08_R16230
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Entry
LAB08_R16230 CDS
T08555
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
piz
Pseudomonas izuensis
Pathway
piz03030
DNA replication
piz03410
Base excision repair
piz03420
Nucleotide excision repair
piz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
piz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAB08_R16230 (ligA)
03410 Base excision repair
LAB08_R16230 (ligA)
03420 Nucleotide excision repair
LAB08_R16230 (ligA)
03430 Mismatch repair
LAB08_R16230 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
piz03032
]
LAB08_R16230 (ligA)
03400 DNA repair and recombination proteins [BR:
piz03400
]
LAB08_R16230 (ligA)
Enzymes [BR:
piz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LAB08_R16230 (ligA)
DNA replication proteins [BR:
piz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAB08_R16230 (ligA)
DNA repair and recombination proteins [BR:
piz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LAB08_R16230 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAB08_R16230 (ligA)
MMR (mismatch excision repair)
DNA ligase
LAB08_R16230 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAB08_R16230 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCX66999
LinkDB
All DBs
Position
1792847..1795204
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKNRILELRAELDLHNYRYHVLDEPSIPDAEYDRLFNELKALEAANPELITSDSPTQ
RVGSEALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPPTLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSA
DIADTHIGNLQQLKAWGMPISHELKLANGIDECLDYYRDIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPDNARPVQIPEQCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFEDIVDLEGFAELSSRKLLGAIEDSKKPGLARFIYALGIPDVG
EETAKVLARSLGSLARVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIADLLKHGL
QIQDQGELGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLQGVIDADWLDMRQAL
PEKQANSVREFFAVEDNRLLAAAAETQLAEFGMHWHSEKKVVEGLPLAGQTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVGFLST
HGLSV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgccaaaaaccgcattctagagctgcgtgccgagctggatctgcacaattac
cgctatcacgtgctggacgagccgagcattccggacgccgagtatgatcggctgttcaac
gagctcaaggcgcttgaagccgctaatcccgaactgatcaccagcgactcgccgacccag
cgagtgggcagcgaggcgttgtcggcattcactcaggtgcgccacgaagtgccgatgctc
agcctcggcaatgccttcgaagaaaccgacatgcgcgagtttgatcgtcgggtgaccgag
gggctggacttgccggctggtgatctgttcggtggtggcgctgcggttgaatacagctgc
gagcccaaactcgatggtctggcggtcagtctgttgtatcaggatggcgtgctggtgcgc
ggcgccacgcgcggcgacggcaccaccggcgaagacatcagcgtcaatgtgcgcaccgtg
cgcaacatcccgctcaaactgcacggcaccggttggccaccgaccctggaagtgcggggg
gaagtgttcatgtccaaggccggattcgagcggctcaatgccacgcaactggaggtcggc
ggcaagacgttcgccaacccgcgcaatgcggcggcgggcagcttgcggcaactggattcg
aagatcaccgccaaccggccattggaattctgctgctacggcatcggccaggtgtccgcg
gatattgccgacacgcacattggtaatctgcagcagctcaaggcctggggcatgccgatc
agtcatgagctgaaactggcgaacggtatcgatgagtgcctggactactaccgcgacatt
ggcgagcggcgcaatgcgttgccctatgaaatcgatggcgtggtgttcaaggtcaacagc
attgcctcccagcgcgagctgggtttccgtgcccgcgaaccgcgctgggccatcgcccat
aaattcccggccatggaagagctcaccgagttgctcgatgtggagttccaggtcggccgc
acgggtgccgtcacgccggtggcgcgcctgaaaccggtcaaggtggcgggtgtcaccgtg
gcgaatgcgacgctgcacaacatggatgaggtggcgcgactggggctgatgatcggcgac
acagtgatcatccgccgcgccggcgacgtgattccgcaagtggtgcaagtggtcaccgag
cggcgtccggacaacgcgcggccggtgcagattccggagcagtgcccggtctgcggttcc
catgtcgagcgcacgcaactggtcaagcgtagcaagggtcgcgagaccgtcagcgaaggt
gcggtctatcgctgtgtcggtcgactggcctgtggcgcgcaactcaagcaggcgatcatt
cacttcgtttcccgtcgggcgatggacatcgaaggcctgggcgacaagagcgtcgaacaa
ttggtggatgaaggtctggtgagttcgcccgcggatctctacgccctgaagttcgaggac
attgtcgacctggaaggctttgccgaactgtcgagcaggaagttgctcggcgccatcgaa
gacagcaagaagccaggcctggcgcgcttcatctatgccctcgggattcccgatgtcggc
gaagagacggccaaggtgctggcgcgctccctgggctcgttggcgcgggtgcagcaagca
ctgccgcaagtgctgacgtacttgccggatgtcggcctggaagtggctcacgagattcac
agcttttttgaggatgcgcataaccagcaggtcatcgccgatctgctcaagcacgggttg
cagatacaggatcagggcgagctgggcgccgaatttgccgccagcacgacactcggtggt
ttcctcgacaagctgcacattccttcggtcgggccgggcggggcgcagaagctggccgac
aaattcggctcgctgcaaggggtgatcgacgccgactggctggacatgcgtcaggcgctg
ccggagaaacaggccaattcggttcgtgagttttttgcagtcgaggacaatcgcctgctg
gccgcggcggccgaaacgcaattggccgaattcggcatgcactggcacagcgaaaagaaa
gtcgtcgaaggtttgccgttggctggccagacctgggtgctgaccggttcgttggagctg
atgagccgcgatgtggccaaggagaaacttgaaagcctcggcgcgaaggtcgccggctcg
gtatcggccaagacccattgcgtggtggcggggccgggggcagggtcgaaattgaccaag
gccaacgagctggggctgaaggtgctggatgaagaggcgtttgtcggatttctgagtacg
cacggcctatcggtgtga
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