Paenibacillus sp. JDR-2: Pjdr2_5893
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Entry
Pjdr2_5893 CDS
T00977
Name
(GenBank) peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
pjd
Paenibacillus sp. JDR-2
Pathway
pjd00550
Peptidoglycan biosynthesis
pjd01100
Metabolic pathways
pjd01502
Vancomycin resistance
pjd02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pjd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Pjdr2_5893
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pjdr2_5893
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
Pjdr2_5893
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pjd01002
]
Pjdr2_5893
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pjd01011
]
Pjdr2_5893
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
pjd01504
]
Pjdr2_5893
Enzymes [BR:
pjd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
Pjdr2_5893
Peptidases and inhibitors [BR:
pjd01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
Pjdr2_5893
Peptidoglycan biosynthesis and degradation proteins [BR:
pjd01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
Pjdr2_5893
Antimicrobial resistance genes [BR:
pjd01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
Pjdr2_5893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VanY
DUF1244
DUF6030
SARAF
Chordopox_A13L
DUF2615
Motif
Other DBs
NCBI-ProteinID:
ACT04497
LinkDB
All DBs
Position
complement(6755241..6756173)
Genome browser
AA seq
310 aa
AA seq
DB search
MRRNVQRRKRRGLAFLAVCVVAIAVILFIRYENLTAQAPEETAANSQNSEQPSPTASDEP
AVSDEPTDAPTDAPSDKPSDTPSNTPSEKPSDKPTDTPADKPAIATAGEEDGYAVVAQPA
SVAVLVDKQYKLPDNYEPKDLVYPDVRFTFSEKIDKRKMRKEAAGALEDLFAGAEKDGIY
LAGVSAYRSQATQKTLFNNYVKKDGMEKALTYSAFPGTSEHQTGLAIDVSGSDGKCAATD
CFGGTPEAEWLADHASEYGFIIRYPEGKDAITGYKYEPWHLRYVGKELAKEINDKGLTLE
EYYNAVPVTK
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgagaagaaacgtacaaagacgaaaaagacgcggattagcttttctggcggtatgcgtg
gttgctatagcagtcattctgtttatccgctacgaaaatttaacggcccaggctccggaa
gagacagcggctaatagccagaactcagaacaaccttctcctacggcatcggatgagcct
gcagtttcggacgagcctacggatgcgccaacggatgcgccgtctgacaaaccgtcggac
acaccttcaaatacgccgtccgagaaaccgtcggacaagccaactgatacaccggctgac
aagcctgcgatagctactgcaggggaagaggatggctacgcggttgtcgctcagcctgca
agcgtagccgtgctggtggacaagcaatacaagctgcctgacaattacgagcctaaggat
ctggtttatccggatgttcgctttacgttcagcgagaaaatcgacaaacgcaaaatgcgc
aaggaagcggctggcgctctggaagatctgtttgccggtgcggagaaagacggcatttac
ctggccggggtctcggcttaccgttcgcaagcaacgcagaagacgcttttcaataattac
gtgaaaaaagacggcatggagaaagcattaacgtacagcgcattcccgggtacgagcgag
catcagaccggtcttgcgattgacgtatcgggcagcgacggcaaatgtgccgcgacggat
tgcttcggcggtactcctgaagcggaatggctggcggatcatgcatcggaatatggcttc
attatccgttatccggaaggcaaggacgccattacgggctacaagtacgagccttggcat
ctccgctatgtaggcaaggagctggctaaggagattaatgataaggggctgaccctggag
gagtattataacgcggttccggtaacaaaataa
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