Prevotella jejuni: CRM71_03185
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Entry
CRM71_03185 CDS
T05287
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pje
Prevotella jejuni
Pathway
pje03030
DNA replication
pje03410
Base excision repair
pje03420
Nucleotide excision repair
pje03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pje00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CRM71_03185
03410 Base excision repair
CRM71_03185
03420 Nucleotide excision repair
CRM71_03185
03430 Mismatch repair
CRM71_03185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pje03032
]
CRM71_03185
03400 DNA repair and recombination proteins [BR:
pje03400
]
CRM71_03185
Enzymes [BR:
pje01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CRM71_03185
DNA replication proteins [BR:
pje03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CRM71_03185
DNA repair and recombination proteins [BR:
pje03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CRM71_03185
NER (nucleotide excision repair)
GGR (global genome repair) factors
CRM71_03185
MMR (mismatch excision repair)
DNA ligase
CRM71_03185
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CRM71_03185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
BRCT_2
DNA_ligase_ZBD
Nlig-Ia
GCOM2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AUI54430
LinkDB
All DBs
Position
I:complement(813543..815564)
Genome browser
AA seq
673 aa
AA seq
DB search
MNKEIQSLVDQLNAASDAYYNGRDEQMTDYEWDAAFDKLKKLEEETGIILPDSPTQNVSA
DNVAGKKEEHEFPALSLAKTKKVEDLAKWAENRPIWLSWKLDGLTLVVTYDNGKLTKVVT
RGNGHIGTNITHLSTAIDGILQTIPYKGHLVIRGEAVISYPDFEQFNMEAEEEYANPRNL
ASGSLTLKDINEVKARHLRWIPFTLVYTEEEITSWGKRMEWLEQQGFKVIDREVIEQPTV
DNIEAVIHHWTERVTGVSSSPFPYPVDGLVISYDDTVYAATGSVTGHHATRAGYAFKWQD
ESAETELDYIEWSCAASTISPVAVFRPVDLEGTTVKRASLCNISECERLGIGDKGTKIAV
IKANKIIPKVINVIESVGTFHIPETCPVCHSATEVSESEVSGTRTLHCTNTHCPAKQLKK
FGRFVSKEGVNIDGLSEQTVQKFINLGWVREYADLFHLTEHATELRTMEGFGNKSVTKLL
AAIEKARNVEARRLLFALNIPLVGQDVCNRLLSAYPLEELIKTATESAAEDVFSTIAGIG
PEKSASFVRWMKDNDNQSMLQHLLVELNVSQPSSVPTGNSCQGLTFVVTGDVHHYKNRNE
LKAYIESQGGKVTGSVSKSTNYLINNDVESTSGKNQKAKELSIPIISEDEFIVRFAQVTA
PETSSQPTEGSLF
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaatacaatcacttgtcgatcaacttaatgctgcatccgacgcttattac
aatggtcgtgatgaacagatgactgactatgaatgggacgcagcctttgataagttaaag
aaattagaagaagaaacaggtattatactccccgattctccaacacaaaacgtatctgcc
gataatgttgctggtaaaaaagaagaacatgagttccctgcactatccttggcaaaaact
aagaaggtagaagaccttgctaaatgggcagagaatagacctatatggctctcatggaaa
ttggacggattaacacttgttgttacatacgataatggtaaactgacaaaggttgtcaca
cgtggaaatggtcatattggcaccaatattactcatctttctacggctattgatggtatc
ttgcaaaccattccctataagggacatcttgttatccgtggtgaagctgtcatcagttat
cctgactttgagcagtttaacatggaagcagaggaagaatatgccaaccctcgcaacctc
gcatcaggctctctcacactgaaagacatcaatgaagtaaaagcccgccacttgcgttgg
attcctttcacactcgtttatacagaggaagaaataacttcttggggaaaaagaatggag
tggcttgaacaacaaggattcaaggttatagatagagaggttatcgaacagcctaccgtt
gacaatatagaagcggtcattcatcattggacagaaagagttactggtgtgagttcatca
ccattcccctaccctgttgacggcttggtaatctcatacgacgacaccgtttatgcagca
acaggttctgtcactggtcatcatgccacacgtgcaggctatgcttttaaatggcaagac
gagagtgctgaaacagaattagactatatagaatggtcatgtgctgcttcaacaatctcg
ccagtagctgtttttcgtcctgtagacttagaagggacaaccgttaaacgtgcttccctt
tgtaatatctccgaatgtgaacgattagggattggtgataagggaacgaagatagctgtt
ataaaggcgaataaaattattccgaaggttattaacgttattgaaagcgttggtactttc
catattcctgagacttgcccagtatgccattctgctacagaagttagcgaaagcgaggtt
agtggaacacgcacactacactgtaccaatacacattgtcctgctaaacagctgaagaag
tttggtagatttgtatcaaaagaaggtgtaaacattgacggactttccgagcagaccgta
cagaaatttattaaccttggctgggttcgtgaatatgccgaccttttccatcttaccgaa
catgccacagaactacgtacaatggaaggtttcggaaacaagagtgtcactaagttattg
gctgctattgaaaaagcgcgtaatgtagaagcacgtcgtctgctctttgctttaaatatt
ccccttgttggacaggatgtttgtaatcgtcttttatcagcatatccattggaggaactt
attaaaacagctacagaaagtgccgcagaagatgtattctcaaccattgctggtattgga
ccagagaagagtgcaagttttgtacgctggatgaaagataatgataatcaatcaatgcta
caacatctgttagttgagctaaacgttagtcaaccttcatcagtaccaactggtaatagt
tgtcagggattaaccttcgtcgttactggtgatgttcatcattataagaatcgtaacgaa
ctgaaagcgtacatagaaagtcaaggtggtaaggtaactggttctgtttctaaatcaacg
aattatcttattaataatgacgtagaaagtacttccggaaagaatcagaaagcaaaggaa
ctttctattcctattatctctgaagatgaattcatagttcgctttgcacaggttacagct
ccagaaacatcttcacaaccaacagaagggagtctattctaa
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