Pantoea jilinensis: KTJ90_00500
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Entry
KTJ90_00500 CDS
T08640
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pji
Pantoea jilinensis
Pathway
pji03030
DNA replication
pji03410
Base excision repair
pji03420
Nucleotide excision repair
pji03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTJ90_00500 (ligB)
03410 Base excision repair
KTJ90_00500 (ligB)
03420 Nucleotide excision repair
KTJ90_00500 (ligB)
03430 Mismatch repair
KTJ90_00500 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pji03032
]
KTJ90_00500 (ligB)
03400 DNA repair and recombination proteins [BR:
pji03400
]
KTJ90_00500 (ligB)
Enzymes [BR:
pji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KTJ90_00500 (ligB)
DNA replication proteins [BR:
pji03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KTJ90_00500 (ligB)
DNA repair and recombination proteins [BR:
pji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KTJ90_00500 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KTJ90_00500 (ligB)
MMR (mismatch excision repair)
DNA ligase
KTJ90_00500 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTJ90_00500 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH_5
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXG54673
LinkDB
All DBs
Position
114231..115982
Genome browser
AA seq
583 aa
AA seq
DB search
MKGFGWPLSAIILWFALWPAHSAVCPVWTPVRATEEIGRLQQQLQHWDDAYYRQGQSLVA
DTDYDALQQRLVTWQHCFSASQPTYSPQLPGKGEHLHPVAHTGVKKMRDKLALAYWIQGR
RDLWVQPKVDGIAVSLVYRHGRLVSLLSRGDGLRGEEWLAKTAWIPAIPLRIETPLDEVV
LQGELFLLMNGHQQAIDGGKNARSLVAGAMMSRQRTPLLDSLGVFIWAWPDGPATMTERH
EQLSRWGLGISAEWSHNVKDEEDVAIWRERWFHAALPFVTDGVVVHQSLRPAGKNWLPGE
GIWAVAWKYQPPEVSAEVLSVDFPIGRTGKIAAVLNLQPVQLDDKTVRRVNVGSLRRWQE
SDIVAGDVVTLSLAGQGIPRLERVIWRVAERHYPQPPEASRYTPLSCYTFSAECQKQLLA
KLRWLSQKTVLNIPGVERSTWLRLLESGSMTHLFGWLTLTPEQIAAATGLSPERADQLWH
RFNLTRQQPFRRWVKALGVSLPQKALNALPDQQWESVMRRDVMAWQTLPGVGAGLATRLA
EQFQDARLQALIAFLQQQGIPASSMLGVGIVENRQTETEAQRQ
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggattcggctggccgctatctgcgattattctgtggttcgccctatggcctgcg
cacagtgccgtgtgtccggtctggacacccgtacgggcgactgaagagatcggccgtttg
caacagcaactgcaacactgggatgacgcttattatcgccaggggcagagtctggtggct
gacacggattacgatgcgctgcagcagcggcttgttacctggcaacactgctttagcgct
tctcagcccacttattcgccgcaactgccgggcaaaggtgagcacctgcatccggtcgcc
catactggcgtaaaaaagatgcgcgacaagctggcactggcttactggatacaggggcga
cgcgatctctgggtgcagccaaaagttgatggcatcgccgtttcactggtgtatcgccat
ggcaggctggtctcgttgttaagtcgtggcgatggattgcgcggtgaagagtggctggct
aaaaccgcctggatcccggcaattccgctgcgtatcgagacccctctcgacgaggttgta
ctgcagggcgagctgtttttgttgatgaacggtcatcagcaggcgattgatggcggcaaa
aatgcgcgctcactggtggccggcgcgatgatgagcaggcagcggactccgctgctggat
tcgctcggtgttttcatctgggcatggccagatggtcccgccacaatgacggagcgccat
gagcaactcagccgctgggggctgggcatttcagcagaatggagccacaacgttaaagat
gaagaggacgtagccatctggcgtgagcgctggtttcatgctgcgctgccttttgtcaca
gacggcgtggtggttcatcagagtctgcggcctgcaggcaaaaactggctgccaggcgag
ggtatatgggcggttgcctggaaatatcagcctcctgaagtcagtgctgaagtgctctcc
gtcgatttccccattggccgaaccggaaaaatagcggcggtacttaatcttcagccagtg
caactggatgataaaacggtcaggcgggttaatgtcggatcgctacgtcgctggcaggag
agcgatatcgtcgcgggcgatgtggtcacgctgagtctggcgggtcagggaattcccagg
ctggagcgggtcatctggcgcgtggcagagcgacattatcctcagcctcccgaggcgtcg
cgttatacgccattgagttgttataccttcagcgctgagtgccagaagcagttactggcg
aaattacgctggctcagccagaaaacggtgctgaatattcctggggttgagcgcagcacc
tggctgcgcttactggaaagcggcagtatgacgcatctgttcggctggctgacgttaaca
ccggaacagattgccgccgcgacgggtctttctcctgaacgtgcagatcagctctggcac
cgttttaatctcactcgtcagcaaccgtttcgtcgatgggtgaaggcccttggcgtttca
ttgccgcaaaaggccctgaatgcgctgcccgatcagcagtgggagagcgtaatgcggcgg
gatgttatggcctggcaaactctgccgggcgttggtgcggggctggcaacgcgcctggct
gagcagtttcaggatgcccgtctgcaggccctcatcgcgttcctgcaacagcaggggatt
cctgcgtcctcaatgctcggggtggggatagttgaaaatcggcaaaccgagacggaagcg
cagcgccagtaa
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