Pantoea jilinensis: KTJ90_05435
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Entry
KTJ90_05435 CDS
T08640
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pji
Pantoea jilinensis
Pathway
pji03030
DNA replication
pji03410
Base excision repair
pji03420
Nucleotide excision repair
pji03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KTJ90_05435 (ligA)
03410 Base excision repair
KTJ90_05435 (ligA)
03420 Nucleotide excision repair
KTJ90_05435 (ligA)
03430 Mismatch repair
KTJ90_05435 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pji03032
]
KTJ90_05435 (ligA)
03400 DNA repair and recombination proteins [BR:
pji03400
]
KTJ90_05435 (ligA)
Enzymes [BR:
pji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KTJ90_05435 (ligA)
DNA replication proteins [BR:
pji03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KTJ90_05435 (ligA)
DNA repair and recombination proteins [BR:
pji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KTJ90_05435 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KTJ90_05435 (ligA)
MMR (mismatch excision repair)
DNA ligase
KTJ90_05435 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KTJ90_05435 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
RNA_ligase
DUF4874
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QXG55587
LinkDB
All DBs
Position
1153226..1155244
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQ
RVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSEDITYCCELKLDGAA
VSLMYENGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMTQRG
FEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHM
ARLQQFKAWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPVCGSEVERVEG
ESVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVSTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMD
ADLEALIAVPDVGKVVATHVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgtccaggatcacatcaccgaactgcgcaccacgctgcgccatcacgaatat
ctctaccacgtcatggatgcgccggaagtgccggatgctgaatacgatcgcctgatgcgt
gaactgcgtcagctggaagaggaacatcccgatctcattacaccggattcgcccacccag
cgtgtgggtgctgcgccgctgacggtatttgagcaggttcgccatgaagtgccgatgctg
tcgctggacaacgcgtttgatgaagccacatttatggctttcaacaagcgggtacaggat
cggctgaaaaacagtgaggacattacttactgctgtgaactcaagctcgatggcgctgcg
gtcagcctgatgtatgaaaatggcctgctggttcaggccgcgacgcgcggtgacggcacg
accggtgagaacattaccgccaacgtccggaccattcgcgctatcccgctgcggctgaag
ggcgacaacatcccggcccggctggaagtgcgcggcgaggtgtttatgacgcagcgcggc
ttcgagaagcttaatgaagaagcgcgtcggacagacggcaaagtttttgctaacccgcgt
aatgcagcagcaggttccctgcgtcagcttgatccacgcattaccgccaaacgtccgctg
acgtttttctgctacggttttggcctgctggaaggcggtgagatgccacacagccacatg
gcgcgcctgcaacagtttaaagcctggggcctgccggtcagcgaccgcattaagcgggtg
cataatgcggaggaagccctggcgttctatcgggaaattgagcaacaacgtccgaacctg
ggttttgatatcgatggtgtcgtaatcaaagtcgattcacaggcgctgcaggagcagttg
ggctttgtggcgcgagcgccgcgctgggcgattgcttttaagttcccggcacaggaacag
ctgacctgggtgcgcgacgtcgaatttcaggttggccgcacaggcgctatcacgccagta
gctcgcctggagccggtgcaggtcgcaggcgttatcgtcagcaatgccacactgcataat
gcagacgaaatcgaacggctgggtttacgcatcggtgatcgagttgtgattcgccgcgcc
ggcgatgtgattccgcaggtcgtcaacgtggttatcgcggagcgacctgaagagacgcga
gaggtggtatttcctgcccattgtccggtctgcggttctgaggttgaacgggttgaaggc
gaatcagtcacgcgctgcaccggcggcttgatctgcggcgcacagcgcaaagaggcactg
aagcattttgtctcacgtcgggcgctggatgtggatggcatgggcgataagattatcgac
cagctggtggagaaagagtacgtgagtacgccagccgatctgttccgtctcacggcgggc
aagctgaccggactggatcgcatggggccgaaatcagcgcaaaacgttgtagatgcgctg
gagaaagcgaagtcgaccacgctggcacgcttcctctatgcgctgggcattcgtgaagtg
ggtgaagctaccgccgctaatctggctaaccattttggtgagctgcagaaggtgatggat
gccgatcttgaggcgctcattgcggtaccggatgtgggcaaagttgttgccacacacgtt
cgcaacttcatggaagaggagagcaaccgtgaagttatccgtcagctgaccgaagagatc
ggcattcactggccgcaggtggtggtagtgaaagccgaagagatcgacagtccgttcgcg
gggaaaacggtggtgctgaccggctcgctgtcgcagatgaaccgtgatgatgccaaagcg
cagctcgtcgcgctcggcgcaaaagtcagcggcagcgtatcgaagaaaaccgatctgctg
attgccggagaagctgccggttccaaactggcgaaagcacaggaactgggcatagaggtg
attgatgaagcggaaatgattcgcctgctgggggcctga
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