Pseudoxanthomonas japonensis: LAG73_06120
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Entry
LAG73_06120 CDS
T07964
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pjp
Pseudoxanthomonas japonensis
Pathway
pjp03030
DNA replication
pjp03410
Base excision repair
pjp03420
Nucleotide excision repair
pjp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pjp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAG73_06120 (ligA)
03410 Base excision repair
LAG73_06120 (ligA)
03420 Nucleotide excision repair
LAG73_06120 (ligA)
03430 Mismatch repair
LAG73_06120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pjp03032
]
LAG73_06120 (ligA)
03400 DNA repair and recombination proteins [BR:
pjp03400
]
LAG73_06120 (ligA)
Enzymes [BR:
pjp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LAG73_06120 (ligA)
DNA replication proteins [BR:
pjp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAG73_06120 (ligA)
DNA repair and recombination proteins [BR:
pjp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LAG73_06120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAG73_06120 (ligA)
MMR (mismatch excision repair)
DNA ligase
LAG73_06120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAG73_06120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UBB26653
LinkDB
All DBs
Position
1318202..1320547
Genome browser
AA seq
781 aa
AA seq
DB search
MTAPTPADRAIELRRLLDDANYRYHVLDEPNIPDAEYDRLLRELDELEAANPDLITPDSP
TQRVGNAPSARFAEVRHAIPMLSLGNAFSDEEVQDFVRRIAEKLKRPHLLFSVEPKLDGL
AISLRYEDGAFVQGATRGDGATGEDVTANLRTIKAIPMRLRGKGWPRVLEVRGEVYMPLA
AFRAYNERALKEGGKVLANPRNGAAGSLRQLDPRMTAQRPLAFYAYAVGLVEGGDLPASH
SQTLARLREWGFPVSAENRVVDGVDGLLDYFRSVGDKRDALPFDIDGVVYKLDDYEGQRE
MGFVSRAPRWAIAHKFPAQEQMTVLESIEVNVGRTGAVTPWALMQPVQVGGVTVTRATLH
NADQIARLDVRNGDTVIIRRAGDVIPEVVRVVLERRPPGTQPWSMPTLCPVCGSEVVREE
GEAVWRCSGELTCAAQRKEAIGHFASRRAMDIEGLGERYVEVLSDLGYVTSVADLYRLTV
DDLLEMKRRADERDGTTPETVKAGKVATKWADNLIEAIDHSRTTTLERFLFALGIQHVGE
STAKALALWFGDLELIRRMPWPLFKRVPDIGGEVARSLGHFFDQPGNQQVIDDLLSRGVT
LTDAHPPHPKLRDDLGLAALLVDLEIPKVTRVRAEQLAAAFPRVEALVDAPAHQFVSAGL
PSESANALAAWLEAPEHARLLAHAGQVVEHLLSITPEGDTGPAGPLEGKTVVLTGGLAAM
SRDEAGAKLEALGAKVAGSVSKKTSLVVAGEAAGSKLAKAQELGIEIWDEAQLLAFLAKH
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcacccacacccgccgaccgcgccatcgagctgcgtcgcctgctcgacgatgcc
aactaccgctaccacgtcctcgacgaacccaatatcccggacgccgagtacgaccggctg
ctgcgcgaactggacgaactggaagcggcgaacccggatctgattaccccggactcgccc
acccagcgggtcggcaacgcgccctcggcccggttcgccgaagtccgccacgcgatcccg
atgctgtcgctgggcaatgccttcagcgacgaggaagtgcaggacttcgtccgccgcatc
gccgaaaagctgaagcggccgcacctgttgttctcggtcgagcccaagctcgatggcctg
gcgatcagcctgcgctacgaggacggcgcgttcgtgcagggcgccacgcgtggcgacggc
gccaccggcgaggacgtcaccgccaacctgcgcaccatcaaggccattccgatgcgcctg
cgcggcaagggctggccgcgggtgctggaagtgcgcggcgaggtgtacatgccgctggcc
gcgttccgcgcctacaacgagcgcgcgctgaaggagggcggcaaggtgctggccaatccg
cgcaacggcgcggccggctcgctgcggcagctggatccgcgcatgaccgcgcagcgtccg
ctggcgttctacgcctacgcggtcgggctggtcgagggcggcgacctgccggcgagccat
tcgcagaccttggcgcgcctgcgcgagtggggtttcccggtcagcgcggagaaccgcgtg
gtcgacggcgtggatggcctgctcgattacttccggagcgtcggcgacaagcgcgacgcg
ctgccgttcgacatcgacggcgtggtctacaagctcgacgactacgaaggccagcgcgag
atgggtttcgtctcgcgcgcgccgcgctgggcgattgcgcacaagttcccggcgcaggaa
cagatgaccgtgctggaatcgatcgaggtcaacgtcggccgcaccggcgcggtcacgccg
tgggcgctgatgcagccggtgcaggtcggcggcgtcaccgtcacccgcgccaccctgcac
aacgccgatcagatcgcccgcctggacgtgcgcaacggcgacaccgtgatcatccgccgc
gccggcgacgtgattccggaagtggtgagggtggtgctggagcgccgcccacccggtacc
cagccatggtccatgcccacgctgtgcccggtatgcggttcggaagtggtgcgcgaggaa
ggcgaggcggtctggcgctgttccggcgaactgacttgcgctgcgcagcgcaaggaggcc
atcggccactttgcctcgcgccgcgcgatggacatcgagggcctgggcgagcgttacgtc
gaggtgttgagcgatctgggctatgtcacctcggtggccgacctgtaccggctgacggtg
gatgacctgctggagatgaaacgccgcgccgacgagcgcgacggcaccacgccggaaacg
gtgaaggcgggcaaggtcgccaccaagtgggcggacaacctgatcgaggcgattgaccac
agccgcacgaccacgctggagcgcttcctgttcgcgctgggcatccagcatgtcggcgag
agcaccgccaaggcgctggcgctgtggttcggcgatctggaattgatccggcgcatgccg
tggccgctgttcaagcgcgtgcccgacatcgggggcgaagtcgcgcgctcgctgggccat
ttcttcgaccagcccggcaaccagcaggtcatcgacgatctgctgtcgcgcggcgtcacc
ctcaccgacgcgcacccaccgcacccgaaactgcgcgacgacctcggcttggccgcgctg
ctggtggatctggaaatccccaaggtcacccgcgtgcgcgccgagcaactggccgccgcg
ttcccgcgcgtggaggcgctggtggacgcgccggcgcaccagttcgtcagcgccggcctg
ccgtccgaatcggccaacgcgctggcggcctggctggaagcgcccgaacacgccaggctg
ctggcgcacgcgggccaggtggtggaacacctgctgtcgatcacgcccgaaggcgacacc
ggtccggccggtccgctggaaggcaagaccgtcgtgctgaccggtgggctggcggcgatg
agccgcgacgaggccggcgcgaaactcgaggcgctgggcgcgaaggtcgccggcagcgtg
tcgaagaaaaccagcctggtggtggccggcgaggccgccggttccaagctggcgaaagcg
caggagctgggcatcgaaatctgggacgaggcgcaactgctggctttcctggcgaagcac
gcatga
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integrated database retrieval system
