Pseudomonas juntendi: L1P09_16960
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Entry
L1P09_16960 CDS
T08267
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pju
Pseudomonas juntendi
Pathway
pju03030
DNA replication
pju03410
Base excision repair
pju03420
Nucleotide excision repair
pju03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pju00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1P09_16960 (ligA)
03410 Base excision repair
L1P09_16960 (ligA)
03420 Nucleotide excision repair
L1P09_16960 (ligA)
03430 Mismatch repair
L1P09_16960 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pju03032
]
L1P09_16960 (ligA)
03400 DNA repair and recombination proteins [BR:
pju03400
]
L1P09_16960 (ligA)
Enzymes [BR:
pju01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L1P09_16960 (ligA)
DNA replication proteins [BR:
pju03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1P09_16960 (ligA)
DNA repair and recombination proteins [BR:
pju03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L1P09_16960 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1P09_16960 (ligA)
MMR (mismatch excision repair)
DNA ligase
L1P09_16960 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L1P09_16960 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UJM11026
LinkDB
All DBs
Position
complement(3654113..3656443)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALSAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAVDYSCEPKLDGLAV
SLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLKLHGEGWPALLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQLSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLDYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPDDARPVAVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLQFEQVVGLEGFAEVSTRKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMHLQDEGELA
AEFAASTSLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARAIEAQLLAFGMHWTSEKKVAEGLPLAGQTWVLTGTLERMSRDVAKDK
LESLGAKVAGSVSGKTQCVVAGPGAGSKLAKASELGVKVLDEEAFVAFLAEQGIAI
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgcgccgaactcgaccagcacaactaccgc
tactacgtgctcgacgagcccagtgtgcccgacgccgaatacgaccgcctgttcaacgag
ctcaaggcgttggaagccgaacacccgcacctggtaacccccgactcgcccacccagcgc
gtcggcggtgcagccctgtcggcctttagccaggtgcgccatgaagtgcccatgctcagc
ctgggcaacgccttcgaggaggccgacctgcgtgagttcggccgccgcgtggtggacggc
ctcgatcagcccggcgcggttgactacagctgcgaacccaagctcgatggcctggccgtt
agcctgctgtaccgcgatggcctgctggtgcagggtgccacgcgcggcgacggcaccact
ggcgaagatatcagcgccaacgtacgcaccgtgcgcaacattccgctgaagttgcacggc
gagggctggcccgcgttgctggaagtgcgtggcgaggtctacatgagcaaggccggcttc
gaccgcctcaatgcagcccaggccgaagccggcggcaagaccttcgccaacccgcgcaac
gcggctgccggtagcctgcgccagctcgattcgaaaattacggccagccgcccgctggag
ttctgctgctacggcgtcggtcagctgtctgccagcatcggcgacagccatatcggcatc
cttgaacagctcaaggcatggggcctgccgatcagccgcgagctcaagcatgcggcaggg
atcgaagagtgcctggattactaccgcgacatcggcgagcggcgcaacagcctgccgtat
gaaatcgatggtgtggtattcaaggtcaacagcctggccgcccagcgtgaactgggcttc
cgcgcccgtgaaccgcgctgggcaatcgcccacaagttcccggccatggaagagctgacc
gaggtgctggacgtcgagttccaggtcggccgtaccggcgcggtcaccccggtggcacgc
ctgaaaccggtcaaggtggcgggcgtgaccgtgtccaacgccaccctgcacaacatggac
gaaatcgcccggctgggcctgcgcattggcgacacggtgatcatccgccgggccggcgac
gtgatcccgcaggtgatgcaggtggtgctggagcgtcgcccggacgatgcccgcccggtt
gccgtgccaagcgagtgcccggtgtgtggctcgcaagtcgagcgcacccagctggtcaag
cgcagcaagggcaaggagaccaccagcgaaggggcggtgtaccgctgtgtcggccgcctg
gcctgtggtgcgcagctcaagcaggcgatcattcactatgtgtcgcgtcgcgccatggac
atcgacgggcttggcgaaaaaagcgtcgagcagttggtggacgaaggcctgatcggctcg
ccggctgacctgtacaagctgcagttcgagcaggtggtcggcctggaaggcttcgccgag
gtgtccacccgcaaactgctggatgccatcgaagccagcaagcggccgagcctggcgcgt
ttcatctatgcgctgggcataccggatgtgggtgaggagacggccaaggtgctggcccgt
tcgctgggcagcctggcgcgcgtgcagcaggccttgccgcaggtgctgacgtatctgccg
gacattggccttgaggtcgcctacgagattcacaacttcttcgaagatgagcacaaccag
aaggttatccagcagttgctcgacagcggcatgcacctgcaggacgaaggcgagttggcc
gccgaattcgcggccagcaccagcttggccggcatgatcgccaagctcgacatcgcttcg
gtaggcccaaccggtgccgagaaactggtagccaagctcgacagcctggacaagatcatc
gctgccgacggcatcgacctgcgccaggcactggcggccaagcaggcggacgcggtgcgt
gaattcttcaaggatgaggccaaccagaaactggcgcgcgcgatcgaggcgcagttgctg
gcgttcggcatgcactggaccagcgagaagaaagtcgccgagggtttgccgctggccggc
cagacctgggtgctgaccggtaccctggagcgcatgagccgcgatgtggccaaggacaag
ctggaaagccttggcgccaaggtggccggttcggtgtcgggcaagacccagtgcgtggtc
gcagggccgggggctggatcgaagctggccaaggccagcgagctgggcgtgaaggtgctg
gacgaggaggccttcgtcgcgttcctggccgagcagggcatcgctatttaa
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