Paenibacillus kyungheensis: PQ456_19465
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Entry
PQ456_19465 CDS
T08956
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pka
Paenibacillus kyungheensis
Pathway
pka03030
DNA replication
pka03410
Base excision repair
pka03420
Nucleotide excision repair
pka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ456_19465 (ligA)
03410 Base excision repair
PQ456_19465 (ligA)
03420 Nucleotide excision repair
PQ456_19465 (ligA)
03430 Mismatch repair
PQ456_19465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pka03032
]
PQ456_19465 (ligA)
03400 DNA repair and recombination proteins [BR:
pka03400
]
PQ456_19465 (ligA)
Enzymes [BR:
pka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQ456_19465 (ligA)
DNA replication proteins [BR:
pka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ456_19465 (ligA)
DNA repair and recombination proteins [BR:
pka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQ456_19465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ456_19465 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQ456_19465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ456_19465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
DNA_ligase_ZBD
DUF669
RUBY_RBDX
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WCT55301
LinkDB
All DBs
Position
complement(4477551..4479569)
Genome browser
AA seq
672 aa
AA seq
DB search
MDPMHEMEQLITELNKYSYHYYTLDEPLVDDKEYDVLYDRLIQLEEVSGIVLPDSPTQRV
GGELLKGFLPHRHLSPLWSLDKAQNLEKLASWHTRARKLIADYNTKNPDQPLPEPSYAIE
LKFDGLTLNLTYENGKLIQAATRGNGVTGEGILEQVKTIRSIPLSIPFKEGKIEVQGEGI
MNLSVLAAYNENATDKDKLKNARNAAAGALRNLNPKVTATRRLSAFFYNIGYMDGITFES
HQEMMQFLKDNHFKVNPYIFYFENFDDVIAQLEDIQAQRTGLDYLIDGAVVKITDMRTRE
VLGYTDKFPRWAIAYKFEAEETSTILESVSWNVGRTGKITPLARVEAVELAGVTVQNCTL
NNIGDIERKNLKYAIGTRVFIRRSNEVIPEILGKVTEESDGEEIIFPEKCPACGFPLEQR
GAHLFCNNTLECTPQIIAKITHFASRDAMDIETFSIMTAQQLHSELGVKEPADLYALEFE
KLVELERFGERKANNLLQAIEESKTRDLASFLYALGIPNTGKSTTRMLAEHYRDLHKVMN
ATVEELVELPDIGNIVAESIVAFFADPFMQTSIQKMLDRGVQPQSPAEPVVINTDSYFAG
KTVVLTGTLQTMTRDDAAARLESLGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGIEVI
EDEEELKRLLEL
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatgcatgaaatggaacaattaattacagagcttaataagtacagctaccat
tactatacgttagatgaacctctagtcgatgataaagaatatgatgttctatatgatcga
ttaatccaattggaagaagtcagtggaatcgtactgcctgattcgcctactcagcgtgta
ggtggagaattgttaaaaggatttttacctcatcgccatctttctccattatggagtcta
gacaaagctcaaaatttagaaaagctagcaagttggcatacacgtgctcgtaaattaatt
gctgattataataccaaaaatcctgatcaaccattgccagaaccctcttatgcgattgaa
ctcaagttcgatggattaacacttaatctcacctatgaaaatgggaagttaattcaagcg
gcaacccgaggtaatggagtaaccggagaaggaattttagaacaagtcaaaacgattcgt
tcgattccattatctattcctttcaaagaaggcaaaattgaagtacaaggcgaaggcatt
atgaatctatctgtactagcagcttataatgagaatgctacagataaagacaaactcaaa
aatgcacgtaatgctgctgcgggtgctttgcgtaatttgaatcctaaagtaacagctact
cgtcgtttaagtgctttcttttataacatagggtatatggacggtattacatttgaaagt
catcaagagatgatgcaatttcttaaagacaatcatttcaaagtcaatccgtatattttt
tactttgagaattttgatgatgtgattgctcaattggaagatattcaggcacaacgtaca
ggattagattacttaatcgatggtgctgtggtcaaaattacagatatgcgtacccgcgaa
gtactgggatatactgataaattcccacgctgggcaattgcttacaaatttgaagcagaa
gaaacgagcacgattttagaatcggtgtcttggaatgtaggtcgtacaggtaaaatcaca
ccattagctcgtgtagaagctgttgaacttgcaggtgtgactgtacaaaattgcacgcta
aacaatattggagacattgaacgcaaaaatttaaaatatgcaatcggaacacgtgttttt
attcgccgttcgaatgaagttataccggagattcttggtaaagtgactgaagaaagcgat
ggagaagaaatcattttcccagagaaatgccctgcttgtggatttccattagaacagcgt
ggagcccatctattctgtaacaacacactagagtgcacaccacagattatagctaagatt
acacattttgcttctagagatgctatggatatcgagacatttagcataatgacagctcaa
caattgcatagtgagttaggggtcaaagaaccagcagacctgtatgctttagaatttgag
aaattagtagaactagaacgatttggtgagcgcaaagcaaataatttattgcaggctatc
gaagaaagtaaaaccagagatttagcatcattcttatatgctttaggtattccgaataca
ggtaaatctacaactcgtatgttagccgagcattatcgtgatttacacaaagtcatgaat
gcaacagtagaagagttagtcgaattaccggatatcggcaatattgtagctgaaagcatt
gttgctttttttgcagatccttttatgcagaccagtattcagaaaatgttagaccgaggt
gtacaaccgcaatctcctgctgaacctgttgttatcaatacagattcttactttgcaggc
aaaacggttgtacttacaggtacattacagacgatgactcgtgatgatgccgctgcgcgc
ctagagtctctaggcgccaaagtgacaggtagtgtatccaaaaagacagatatcgtgatc
gctggtgaaaaagcaggtagcaaactcaccaaagctcaagagctcggtattgaagtcatt
gaagacgaagaagaattaaagcgattattggaattataa
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