Paracoccus kondratievae: F8A10_05240
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Entry
F8A10_05240 CDS
T06245
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pkd
Paracoccus kondratievae
Pathway
pkd03030
DNA replication
pkd03410
Base excision repair
pkd03420
Nucleotide excision repair
pkd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F8A10_05240 (ligA)
03410 Base excision repair
F8A10_05240 (ligA)
03420 Nucleotide excision repair
F8A10_05240 (ligA)
03430 Mismatch repair
F8A10_05240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkd03032
]
F8A10_05240 (ligA)
03400 DNA repair and recombination proteins [BR:
pkd03400
]
F8A10_05240 (ligA)
Enzymes [BR:
pkd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F8A10_05240 (ligA)
DNA replication proteins [BR:
pkd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F8A10_05240 (ligA)
DNA repair and recombination proteins [BR:
pkd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F8A10_05240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F8A10_05240 (ligA)
MMR (mismatch excision repair)
DNA ligase
F8A10_05240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F8A10_05240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QFQ86882
LinkDB
All DBs
Position
1:1028553..1031006
Genome browser
AA seq
817 aa
AA seq
DB search
MGETGENHTGMAEAATSQADLPPVASLDAKAAAAEHARLSGEVSRANLAYHQKDAPFISD
AEYDLSKRRLEEIEARFPELSHAESPTAQVGAAPDQRFAKVPHRLPMLSLENGFSHEDVE
AFVHRLRSFLNLAPDVPLEFTAEPKIDGLSLSLRYEGGKLVQAATRGDGAIGENVTANAL
TISDIPKHLAGDGYPEVLEIRGEVYMSHTDFEQLNQSDNGRVFANPRNAAAGSLRQLDAA
VTASRPLRFFAYAWGEVSAPFARSQMGAVQRMRDFGFQTNPLTRICNSVQDLLAAWAEIE
QMRSTLGYDIDGVVYKVNDLAYQARLGMRSTTPRWALAHKFPAERAWTRLEAIDIQVGRT
GALSPVARLNPVTVGGVVVSNATLHNEDYIAGRGADGSEIRGGKDIRVGDWVEVYRAGDV
IPKVADVDLSKRPGDSAPYVFPTTCPECGSPAIREEGDAVRRCTGGLICPAQAVEKLRHF
VSRAAFDIEGLGARQIEVFYRLNWVAEPADIFTLHARDAAGRKMLADHTHAFLAIESRIE
RAETLHADYRELLSPLGVEIEGPDDLPEALDRLSSCRLAEVKGWGETSASKLFEAIEKRR
EISLARLLFALGIRHVGEVAAQDLARHYGSWDALKTALDIARPAAIAHRAAEDAAQAERE
AAQAEGRRARLAEARGAALARCELSPEAANAWADLIAADGIGPVLAMSLSDAFANERERA
AIDRLIAQLSSILPPEARATDTAIAGKTLVFTGTLEKMTRAEAKARAEALGAHVAGSVSA
KTDLLIAGPGAGSKAKKAAELGIKVIDEDEWLTLAQG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacgggcgagaatcacaccggcatggcagaggctgccacctcacaagctgat
cttccgcctgttgccagtcttgatgccaaggcggctgccgcagagcatgctcggctaagc
ggtgaggtctcgcgcgccaatctggcctatcaccaaaaggacgcgccctttatcagcgac
gctgaatacgatctctcaaagcgccggctggaagagatcgaggcccgctttcctgagctt
tcccatgcagaaagcccgacggcccaggtgggtgcagcccctgaccagcgctttgccaag
gttccacatcgcctgccgatgctgtctttggaaaacggcttcagtcatgaggatgtcgag
gcattcgttcatcggctacggtcatttcttaaccttgcgccggatgtgccgctggaattt
accgccgagcccaagattgacggcctgtcgttgtccttgcgttacgaaggcggaaaactg
gtgcaggccgcaacccgtggcgatggcgccataggcgaaaatgtgacggctaacgccctt
acgatcagcgatattccgaaacaccttgctggtgacggctatccagaggttcttgagatc
cgtggcgaggtctacatgtcgcatacggatttcgaacagctgaaccaatccgacaacggg
cgtgtctttgccaatccacgaaatgctgcggcgggttcgctgcgccagcttgacgcagcg
gtgaccgcctcacgccccttgcggttttttgcctatgcctggggcgaggtcagcgcgccc
tttgcccgtagccagatgggggcggtgcagaggatgcgggatttcgggttccagaccaat
ccactgacacgcatctgtaactcggtgcaggatctgttggctgcctgggccgagatcgag
cagatgcgctcgacccttggctatgacatcgacggtgtggtctataaggttaatgatctt
gcctatcaggcacggcttggcatgcgctcgacgacaccgcggtgggcgcttgcgcataaa
tttcctgccgaacgcgcctggacgcggcttgaggccattgacattcaggtcgggcgtacc
ggcgcgctcagcccggtggcgcggctgaatccggtgacagtgggtggtgtcgtggtttcg
aacgcgacgctgcataacgaggattacatcgccgggcgtggcgctgacggcagcgagatc
aggggtggtaaggatattcgtgtcggcgactgggtcgaagtttatcgggccggcgatgtc
atccccaaagttgccgatgtggatctgagcaaacgcccgggtgattccgcgccttacgtc
tttccgaccacctgtcctgaatgcggctctccagccattcgtgaagagggcgatgccgtt
cggcgttgcaccggtgggttgatttgtccggcgcaggcagtcgaaaaactgcgccatttc
gtttcacgcgccgcctttgatatcgagggtctgggcgcccggcagatcgaggtgttctat
cgcctgaactgggttgcagagccggccgatatcttcacgcttcatgcccgtgatgctgcg
gggcgcaagatgcttgctgaccatacccacgcctttcttgcgattgagagcaggatcgaa
cgcgccgaaaccctgcacgccgattatcgtgaacttctgagcccgcttggtgtcgagatt
gagggacccgatgatttgcccgaggctcttgataggctgtcgtcctgtcggctggccgag
gtaaagggctggggcgaaaccagcgccagcaagcttttcgaggcgatcgaaaagcggcgc
gagatttcgctggcccgcctgctttttgcgctggggatccggcatgttggtgaggtcgcg
gcccaggatctggcccgccactatggcagctgggatgcgcttaagactgcgttggacatc
gcccgccctgccgctattgcccatcgcgctgccgaggatgccgcacaggcggaacgtgag
gctgcgcaggccgagggccgtcgcgcccggctggccgaggcgcggggggcggctcttgcc
cggtgcgaactttcgcccgaggccgcgaacgcctgggccgaccttattgctgccgatggt
atcggtccggtccttgccatgtcgctgtcggatgcctttgccaatgaacgcgaacgggcg
gctattgatcgcctgatcgcgcagttaagttcgatcctgccgcccgaggcgcgcgccacc
gacacagccatcgctggcaagacgctggtctttaccggcacgcttgaaaagatgacacgg
gctgaggccaaagcgcgggccgaggcgcttggcgcccatgttgcaggatcggtttcggcc
aagacggatctgctgattgctggcccgggtgcaggctccaaggcgaaaaaggccgctgaa
ctgggcatcaaggtcattgatgaggacgaatggctgacgctcgcccaggggtaa
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