Stutzerimonas kunmingensis: LW136_10485
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Entry
LW136_10485 CDS
T08242
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pkg
Stutzerimonas kunmingensis
Pathway
pkg03030
DNA replication
pkg03410
Base excision repair
pkg03420
Nucleotide excision repair
pkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LW136_10485 (ligA)
03410 Base excision repair
LW136_10485 (ligA)
03420 Nucleotide excision repair
LW136_10485 (ligA)
03430 Mismatch repair
LW136_10485 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkg03032
]
LW136_10485 (ligA)
03400 DNA repair and recombination proteins [BR:
pkg03400
]
LW136_10485 (ligA)
Enzymes [BR:
pkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LW136_10485 (ligA)
DNA replication proteins [BR:
pkg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LW136_10485 (ligA)
DNA repair and recombination proteins [BR:
pkg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LW136_10485 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LW136_10485 (ligA)
MMR (mismatch excision repair)
DNA ligase
LW136_10485 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LW136_10485 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
Bep_C_terminal
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UIP34815
LinkDB
All DBs
Position
2204456..2206825
Genome browser
AA seq
789 aa
AA seq
DB search
MPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEADHPELVTPES
PTQRVGGAALAAFGQVRHEVPMLSLGTAFQEQDLLDFDRRVRKGLDLPAGDLFGDDAVVE
YSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVLE
VRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGR
SDGELPGTHIGILEALKSWGLPISRELKLARGVAECRAYYDAIGEKRDALPYEIDGVVFK
VNAVAQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVAG
VTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGVIAERRPADARAVHVPEQCPV
CGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKI
VEQLVDRGLVNSPADLYCLTHEQVIELEGFAEISTRNLLNAIDASRKPTLARFIYALGIP
DVGEETAKLLARALGSLERIGRALPDVLVYLPEIGLEVAHEIHSFFEDEHNRTVIAQLRE
RGVELQEEGELHPEFAACATLAGLIDKLNIPFIASTGAQRLADRFGSLDAIITADWLDLR
QVERLTEKAARSLRDYFDNPENAHRARQIEAQLREFGMHWQSERKQAAGLPLAGQTWVLT
GSLESMSRDEGKARLEALGAKVAGSVSAKTSCVVAGPGAGSKLTKANELGLTVLDEETFL
KQLSQLEGA
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcccaaaccgccgccgagcgcatcgccgaactgcgcagcgaaattgacgcc
cacaactaccgctactacgtgctcgacgaacccagtgttcccgatgccgagtacgaccgt
ctgttcaatgaactcaaggcgctcgaggcggatcacccggagctggtgacacccgagtcg
ccaacccagcgggtcggcggagcggcactggcggcgttcggtcaggtgcgccacgaagtg
ccgatgctgagccttggaactgccttccaggagcaggatctgctcgacttcgaccgccgc
gtgcgcaaagggctggatctgccggcaggtgacctgttcggcgatgacgctgtggtcgag
tacagctgcgaacccaaactggatggtctggcggtcagcctgctttatgagaacggtcat
ctggtgcgtggcgccacccggggcgatggcagcacgggtgaggacatcagcgccaatgtg
cgtaccgtgcgcaacatcccgctcaagctgcatggcagtggttggcctgcggtacttgag
gtgcgcggcgaaatctacatgcccaaggcggggttcgaagcgctgaatgcgcggcagctg
gaaagcggcggcaaacccttcgccaatccccgcaacgccgctgctggaagcctgcgccag
ctggattcgaagatcaccgcaagtcgtccgcttgagctgtgtgcatatggtgtcggacgt
agcgacggcgagctgccgggcacgcacatcgggattctcgaagcgctgaaaagctggggc
ctgcccatcagtcgtgagctgaaactggccaggggcgtggccgaatgccgggcttactac
gacgccatcggtgaaaagcgcgacgcgctgccgtatgagattgacggtgtggtgttcaag
gtcaacgcggtcgcgcagcagcgtgaactgggcttccgtgcgcgggagccgcgctgggcc
atcgcccacaagtttcccgcgcgggaggaaatcaccgagctgctcgatgtggagttccag
gtcggccgtaccggcgcgatcaccccggtcgcccggttgaagccggtgcaggtggcgggc
gttacggtttccaacgcgacgctgcacaacatggacgaagtggcgcgccttggcgtgatg
atcggcgatacggtgatcgtgcgacgtgcaggcgacgtgattccccagatcctcggcgta
attgccgaacgccgcccggccgacgcgcgcgccgtgcatgtgccggagcagtgcccggtg
tgcggttctgccgtggagcgcacccagctgatcaagcgcagcaaggggcgtgagtcggtg
agcgaaggctcgatctaccgttgcgtcggtcgtctggcctgtcaggcgcagctcaagcag
gcgatcatccacttcgtatcgcgccgcgccatggacatcgatggcctgggcgacaagatt
gtcgagcagctggtggacagggggctggtcaattccccggcggatctttactgcctgacc
catgagcaggtcatcgagctggaaggtttcgccgaaatttccacccgcaacctgctcaac
gccatcgatgccagccgcaaaccgacgctggcccgctttatatatgcgctaggcattccc
gatgtcggtgaagaaaccgccaagttgctggcccgtgcgttgggctccctggagcgcatt
ggtagggcgctgccggatgtgctggtctacctgccggaaatcggccttgaggtggcccac
gaaatccacagcttcttcgaagacgagcacaaccgcacggtcatcgctcaactgcgcgaa
cgcggcgtggaactgcaggaggagggcgagctgcatcccgaattcgccgcctgcgccacc
ctggctggcctgatcgacaaactgaacatcccctttatcgccagcaccggcgcgcagcgc
ctggccgatcgcttcggcagcctggacgccatcatcaccgccgactggctcgacctgcgc
caggtcgaacgcctcaccgaaaaagccgcccgttcattgcgcgactatttcgacaacccc
gaaaacgcccaccgcgcccggcagatcgaagcgcaactgcgtgaattcggcatgcactgg
caaagcgagcgcaagcaagccgcagggctgcccctcgccggccagacctgggtcctgacc
ggcagcctcgaatcgatgagccgcgacgaaggcaaagcccgcctcgaagccctcggcgcc
aaggtcgccggttctgtatccgccaagacgagctgcgtggtggcagggccgggtgccggc
tcgaagctgaccaaggccaacgagctggggttgacggtgctggatgaggagacgtttcta
aagcagctgtcgcagctggaaggcgcctga
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