Ectopseudomonas khazarica: JLK41_15780
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Entry
JLK41_15780 CDS
T07269
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pkh
Ectopseudomonas khazarica
Pathway
pkh03030
DNA replication
pkh03410
Base excision repair
pkh03420
Nucleotide excision repair
pkh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JLK41_15780 (ligA)
03410 Base excision repair
JLK41_15780 (ligA)
03420 Nucleotide excision repair
JLK41_15780 (ligA)
03430 Mismatch repair
JLK41_15780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkh03032
]
JLK41_15780 (ligA)
03400 DNA repair and recombination proteins [BR:
pkh03400
]
JLK41_15780 (ligA)
Enzymes [BR:
pkh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JLK41_15780 (ligA)
DNA replication proteins [BR:
pkh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JLK41_15780 (ligA)
DNA repair and recombination proteins [BR:
pkh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JLK41_15780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JLK41_15780 (ligA)
MMR (mismatch excision repair)
DNA ligase
JLK41_15780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JLK41_15780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QTS84780
LinkDB
All DBs
Position
complement(3306545..3308908)
Genome browser
AA seq
787 aa
AA seq
DB search
MTDVAQRISALRQELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPDSPTQ
RVGGEALGAFGEVRHEVPMLSLGNAFEEDDLHAFDRSVQSGLGLAGGDLFGGGAEVEYSC
EPKLDGLAVSLLYENGQLVRGATRGDGSTGEDISSNVRTIRNVPLKLQGEGWPQVLEVRG
EVFMPKAGFEELNARQAETGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG
ELPGTQVAMLQQLKAWGIPISRELKLARGVQDCLAYYRDIGERRMSLAYDIDGVVFKVNN
IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVMAVVPERRPDDARPVHIPEQCPVCGS
AVERTQLIKRSKGKESVSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMDIDGLGDKTIEQ
LVDEKLIASPADLYQLTFEQIIGLEGFAEVSSNKLLAAIEASKRPTLARFIYALGIPDVG
EETAKVLARSLASLARVRQALPEVLTYLPDIGLEVAHEIHSFFEDAHNQQVIDALLGACG
LQLQEEGELSAEFSAVATLGGMLDKLNIPSVGPGATQKLAERFGSLEAVLGGDWLDMRQT
LPERQAKAVREFFDGEGNAQRARAIEQQLRDFGMHWESEKKVVEGLPLAGQTWVLTGALT
VNRDVAKDKLEGLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGIQVLDEAQFRNFLRD
KHQIELD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtcgcccaacgtatatccgcactgcgccaggaactggacgcgcacaactac
cgctattacgtgctggacgagcccagcgtgccagacgccgagtacgaccgcctgtttcgc
gagttgcaggcactggaggccgagcacccggaactggtgacgcccgattcgccgacccag
cgcgtcggcggtgaagccctcggcgcctttggcgaggtgcgtcatgaggtgccgatgctc
agcctcggtaatgccttcgaggaagacgacctgcatgcgttcgaccgcagcgtgcagagc
ggcctgggcctggctggcggcgacctgttcggcggcggtgccgaggtcgagtacagctgc
gagcccaagctcgatggactggcggtgagcctgctctacgagaacggccagctggtgcgt
ggcgctacccgtggcgacggcagcaccggtgaggacatcagcagcaacgtgcgcaccatc
cgcaacgtgccgctcaagctgcagggcgagggctggccgcaggtgctggaggtgcgcggc
gaggtgttcatgcccaaggccggcttcgaggagctcaatgcacgccaggccgagactggc
ggcaagaccttcgccaatccgcgcaacgcggccgctggcagcctgcgtcagctcgacccg
aagatcaccgccagccgtccgctggagttctgctgctacggcgtcgggcaggtcagcggt
gagctgccgggtacccaggtggccatgctgcagcaactcaaggcctggggcattcccatc
agccgtgagctgaagctggccaggggcgtgcaggattgcctcgcgtactaccgcgatatc
ggcgaacggcgcatgagcctggcctatgacatcgatggcgtggtgttcaaggtcaacaac
atcgaggaccagcagcagctgggcttccgtgcgcgcacgccgcactgggccatcgctcac
aagttccccgcgcaggaggagctgaccgagctgctcgacgtcgagttccaggtcggccgc
accggcgcggtgacgccggtggcgcggctcaagccggtcaaggtggcgggtgtgatggta
gccaatgccaccctgcacaacatggacgaggtggcgcgcctgggggtgatgatcggcgat
acggtgatcatccgccgtgccggtgacgtgatcccgcaggtgatggcggtggtgcccgag
cgccgccccgatgatgcgcgaccggtgcatatccccgagcagtgtccggtgtgcggctcg
gcggtggagcgtacccagctgatcaagcgcagcaagggcaaggaaagcgtcagcgaaggc
tcggtgtaccgctgcgtcggtcgcctgagctgccaggcgcagctcaagcaggcgatcatc
cacttcgtctcgcgccgcgccatggatatcgacggcctcggcgacaagaccatcgagcaa
ctggtcgacgaaaagctgatcgcctcgccggccgatctgtaccagctgaccttcgagcag
atcatcggcctggaaggctttgccgaggtgtccagcaacaagctgctggcggccatcgag
gccagcaagcgaccgacgctggcacgtttcatctatgccctcggcattcccgatgtcggc
gaggaaaccgccaaggtgctggcgcgctcgctggcatcgctggcacgagtgcgccaggcg
ctgccggaagtgctcacctacctgccggacatcggtctggaagtggcgcatgagatccac
agcttcttcgaggacgcgcacaaccagcaggtcatcgacgcgctgctcggcgcctgtggc
ctgcagttgcaggaggagggcgagctgagtgccgagttcagcgccgtcgccaccctcggc
ggcatgctcgacaagctcaatattcccagtgtcggtccgggtgcgacgcagaagctggcc
gagcgtttcggcagcctggaagcggtgctcggcggtgactggctggacatgcgccagacg
ctgccggagcggcaggccaaggccgtgcgtgaattcttcgacggcgaaggcaacgctcag
cgtgcccgcgccatcgaacagcagttacgtgacttcggcatgcactgggaaagcgagaag
aaggtcgtcgaggggctgcccctggccgggcagacctgggtgctcaccggcgcattgacg
gtcaatcgcgatgtggccaaggacaagctcgaagggcttggcgccaaagtggcgggctcc
gtgtcggccaagacccattgcgtggtggccgggcctggcgccggatcgaagctggccaag
gccagcgagctggggattcaggtgctggacgaagcgcagttccgcaatttcctgcgtgac
aagcaccagatcgagctggattga
DBGET
integrated database retrieval system
