Pempheris klunzingeri: 139220813
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Entry
139220813 CDS
T11454
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pklu Pempheris klunzingeri
Brite
KEGG Orthology (KO) [BR:
pklu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pklu03036
]
139220813 (smchd1)
03400 DNA repair and recombination proteins [BR:
pklu03400
]
139220813 (smchd1)
Chromosome and associated proteins [BR:
pklu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
139220813 (smchd1)
DNA repair and recombination proteins [BR:
pklu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
139220813 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
139220813
NCBI-ProteinID:
XP_070708763
LinkDB
All DBs
Position
21:14772874..14795916
Genome browser
AA seq
1984 aa
AA seq
DB search
MEKMFNSSAERKPAKRIRVYDCRNEEELNVPEKWLETSGLDFSGFHRAVYKEFAIRSHER
FVLVTTDRTVLDFDTFEELRDGSTVHLLLQENQALPGATEEHINFLPHYDTIIKSGTYRY
YASAGHKPLPFALAELIDNALSATAKNTGVRTIEIWMMFDHTLGKPAVIVLDNGCGMTSK
QLTNWAVYRLSKFTRNSNTVTREEGYVRPDPVPRSINSDISYFGVGGKQAAFYIGDSTRM
ITKPAGLPDVHELVVSKEDFERKERNKENIYSGSIISRKPGDSSHVSRSDEKFLHALIAE
ERGKESFTAVVITGILPEHITFLKDFKVWTRELAHIYHYYIHGVSGNDMRSSSTSSNDLP
KIDIQVTLREKPSRCPHVMNLREVDHDMETLYINAAVDTFEFKAVTEQDRGTVEGLIRYH
PFLYDRETYPKDPHTMQATPDDDDDDDDDDDDDDDAENDQSRVLHQARGQRPIFDCFWNG
RLIPYTTVSEFDWCVQPRKEADVPAECYKRFSGVLFTDDKFEVSTNKLTFMELELKLKNK
STMFTHYVNGQKQRGSIQKEFKQWLQKCHEKWDKQIQFLGYMETITRTDVPTKKMQYPWA
TFSSIKWDGKTYRKGQLLKSRGTNPILYGTVVRFLLYGEYKRDVFATGGKVEVTREPKAL
YDQTKIIPISKIDKTVTDEAINRNIDSDNDKLPEKLTVDWPDKNPWPLNAVRVAGTPLGP
LKIQILNKKGKCISRMPSAGYGTSKKLVIELKVIKDGPRGGHEVVSFVAQNLGKWDYWFK
RIDNLTDLGMYTLSLSTMINEGNVKVFGGRELPSYKLKFSIKEGAAESFDIGAVSSTVNV
GEPFSIPLQMKDAYGHPATPPANLKPSLKCSGLDLSYENVDSIGTMCTIKGVKARGKVLN
YQHSKTYDLIVALPGLKQDTQIIKISLLPGYPYSLYVTPEDNPIIVENRNPVRFHVEIHD
EAGNITARPNQNVRCQVQGFSCMLTNCSRTGAGQFTTKPIDVKIIQGEPQKLAVQFDMPS
QKNIASVTKELKMVPSTRVSVMALCRRSEEDEKLLLRDNEKIEWLAGGSLENLFYILYDE
ACREVPLTAEIASKIKVNWTADVNLEDLRRGKLPDVQVPTQVQEERFYQVSYQDQSVCFS
FYIVPRPDEPKRLKATLPQNTVKLGETLPGNIILELVDQYDNVTTTLTSTCVDHMTVKAE
DLDKPAIEFIWQESSRCVLVKGVQFQSGTPGSREMCFNYRGYVAHVIVKVTAGDPAQLKL
ISGPERPLQVLNDHGIVTPFLVQLFDKWGNPSGDQRVVVELKSSTPMLKVKSAVISQPVN
TEGKASFNVTSVSGPKGYYQLDFKALFNKKPIPGPSVDLTVIPDPNKPVSLSVEYDTNAK
FPVGDKFPVFSVTVVSDEGSPITTFNPAAASMLLWKGVSSGKMPPQNATELKCSKPMENE
KNDCFHFRDKEIPEQVGKHTIQFSLHIDNTKVLFSKQITINVVANDPVKLGPDAQPPTPA
VSYSKHIANRTLVENMTLRIMDSYGNPTGQDLDGKVVVSIKSSSRGSSKNIPLFEGKTNS
VQFNLVDGKAHITRLAVMEDSPGEDGSSYILVFKPGVTMAPRPLAAFELPFHFYNDAENQ
CKMSALSKEKDELTVALNEYQNMFSLQSQLLQSLTKCLEDASRKQTDLRCELNRRNVKME
PTVSIPNVDRLLAERNAEVLRIQRVPTRVCSIRDNFSSQPDVLGVVGHLAFVQDDDAARV
ISWHIRGDMDCVVTKTIAAARRIYDYTRGNQQVMSLDSVYMPPGDRPLPHIRNGSMLFDP
PGNPVHARGLLIYRQDKESCDIVFKNFLGDTILIDDLDSANMYRKTVVQNRMPCPTILTR
QGDRISGNGKFGGAQNKAPPINTLNVFGAPPPQHYNTLREQIGLLSQYRSVLQSRDEFAK
EREDCLKTMKSTETVKKQQDMEEKKKQLEVIERQLVSTLVRPGKRGPEDAGETSGIVTKR
QRST
NT seq
5955 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatgtttaattcctcggcagaaagaaaacccgccaaaaggatccgtgtttac
gactgtcgtaacgaagaggagctgaacgttccggaaaaatggctggaaactagtggtttg
gacttcagtggttttcatcgagctgtgtacaaggaatttgcaatccgttcacatgaaaga
tttgtcttggtcacgacggacagaacagtgttggattttgacacatttgaggagcttcga
gatggcagcacagtccacttgctgctacaggagaaccaagctcttccaggagcaacagag
gaacatatcaattttctgccccattatgatacgataatcaagagtggcacctataggtac
tacgcgagtgcgggccacaaaccactgccgtttgcacttgctgagctgatcgacaacgct
ctttcagccacagctaaaaacacaggagtgaggacaatagagatttggatgatgtttgat
cacactcttgggaagcctgcagtgattgttttagataacgggtgtgggatgacctctaag
cagctcactaactgggcagtgtacagactctctaaatttaccaggaattccaacacagta
acaagggaggagggttacgttaggcctgaccctgtccctcgtagtatcaacagtgatata
tcctactttggagttggaggaaaacaggctgctttctacattggtgactcaaccaggatg
atcactaaaccagcaggcctcccagatgttcatgagctggttgtgtcaaaagaggacttt
gagaggaaagagaggaacaaagagaatatctatagcggaagcatcataagcaggaagcct
ggtgactcctcacatgtcagtagaagtgatgagaagttcctccatgccttaatcgctgag
gaacgtgggaaggagagcttcaccgccgtggtcattacaggaatcctacctgagcatatc
accttcctgaaagatttcaaagtgtggaccagagaactagctcacatatatcactattac
attcatggagtcagtggaaatgacatgaggagcagctctacaagctcaaatgatctccct
aaaattgacattcaggtcactttgcgggagaagccctccagatgtccgcatgtgatgaat
cttcgggaagttgaccacgacatggagactttgtacataaatgctgctgtggacacgttt
gagtttaaggccgtcaccgaacaagacagaggcacagtggagggactcattcggtatcat
cccttcctctatgacagggagacttaccctaaagacccacatactatgcaagcaactcct
gatgacgacgacgacgacgacgatgacgacgatgacgacgatgacgccgaaaatgatcag
tctagagtcctgcatcaagcaagagggcaaaggccaatctttgactgtttctggaatgga
cgtctcataccatacaccactgtgtctgagtttgactggtgtgttcagcccagaaaagaa
gcagacgtgcctgcagagtgttacaagcggttttcaggggtgctttttactgacgacaaa
ttcgaggtcagcacgaacaagctcaccttcatggagctggagctgaagctgaagaacaag
agcacgatgttcacacactacgttaatggacagaaacaaagaggcagcattcagaaggag
tttaagcagtggctgcaaaagtgtcacgagaagtgggacaagcaaatacagttcctgggc
tacatggagaccataacccgaacagatgtgcccactaagaaaatgcagtatccctgggcg
acgttctcctctatcaaatgggacggcaaaacatacagaaaaggccaactcctgaagtct
cggggcacaaatcccattctgtatggtaccgtggttcggtttttgctgtatggagaatat
aagagagatgtctttgccacaggaggaaaggttgaagtgactcgggaacccaaagcactt
tatgaccagacaaagatcatacccatttccaagatcgacaagaccgtcaccgatgaagcc
atcaacagaaacatcgatagtgacaacgacaagcttccagagaaactgacagtggactgg
ccagataaaaacccctggccactgaatgctgttcgtgtggctgggactccgttagggcca
ctcaaaatacaaattttgaacaagaagggaaagtgcatatccaggatgccatcagcgggc
tatggaactagtaaaaaactggtcattgaactcaaagtcatcaaggacggtccaagagga
ggtcacgaggttgtctcgtttgttgcccaaaatttaggaaagtgggattactggttcaaa
agaattgataatctgactgacctggggatgtatacactgtctctgagcactatgataaat
gaaggtaacgttaaagtgtttggaggcagagagcttcccagctacaaactaaagttctcc
ataaaagagggtgctgctgagagtttcgatatcggtgcagtgagctccactgttaatgtg
ggagagccgttcagcattcctctgcagatgaaagacgcatatggccacccggcgacgcct
cctgccaatctcaaaccttcactcaaatgcagtggcctggatctgagttatgagaacgtg
gacagcatagggaccatgtgcaccatcaaaggtgtcaaagcaagaggaaaagttctgaat
tatcaacattcaaagacatatgacctgatagtggccctgcctggcctgaaacaagacaca
cagatcatcaagatcagtcttcttcctggttatccatattccctctatgtgacaccagaa
gacaacccaatcatagtagagaacagaaaccctgtgaggtttcatgttgaaattcacgac
gaggctggaaacatcaccgctcgccccaaccagaatgttcgctgccaggttcaagggttt
tcttgcatgttaactaactgcagcaggacaggagctggacagttcacgacaaagcccata
gatgtgaaaataatccagggagaaccacaaaagctcgcagttcaatttgatatgcctagt
cagaagaacattgcgtctgtcacgaaggagctgaagatggttcccagtacacgagtatcc
gtgatggcactctgcagacggagtgaggaggatgagaaactgctgctgagggacaatgaa
aagatagaatggctggctggagggtcgctggagaacctgttctatattctgtatgacgag
gcctgcagggaagtgccgctcactgctgaaatagcctccaagatcaaggttaactggaca
gcagatgtaaacctggaagatctgcgacgggggaagctgcctgatgtacaggtgcccacg
caggtgcaggaagagcgcttctaccaggtgtcttaccaagaccagagtgtgtgtttctcc
ttttatatagtgcctcgtccagacgaaccaaaacggctgaaagcaactctgccccaaaac
acagtgaagctgggtgaaaccctccctggaaacatcatcttggagcttgtggaccagtat
gataatgtaaccacaacgttaacctccacctgtgtggaccacatgactgtgaaagctgag
gatcttgacaaaccggccatcgagtttatatggcaggagagcagcagatgtgttctggta
aagggggtgcagtttcagtctgggactcctggttccagagagatgtgcttcaactacagg
ggctacgtggcgcacgtcatagttaaagtgactgctggagaccctgcacagctcaaactc
atcagcgggccagaaaggcctttgcaggtgttgaatgaccatggcattgtcacaccgttc
cttgtccaactgtttgacaagtggggaaatccctctggagaccaaagggtggtggtagaa
ctgaagtcttcaactccgatgctgaaggtgaagtctgctgtaatttcacaacccgtgaac
acagaggggaaagcctctttcaatgtcacaagtgtcagtggaccaaaggggtactatcag
ctggactttaaagctttattcaacaagaaacccatccctggtccatcggtggatctcacg
gtcatccctgatcccaacaaaccagtcagcctgtcagtggagtatgacaccaatgccaag
tttcctgtcggggacaaattcccagtgttctcggtgactgtggtgtctgatgagggaagc
ccgattacgacttttaaccctgctgcagcgtccatgttgctgtggaagggagtgtcctca
ggaaaaatgcctccacaaaatgccactgagctgaagtgtagtaaacccatggaaaatgaa
aagaacgactgttttcacttcagagataaagagatcccagagcaagttgggaagcacacc
atccagttttctctgcatatagacaatacaaaagtcctgttcagtaagcagattactata
aatgtggtggccaatgatcctgtcaaactgggacccgacgctcagcctccaacccctgct
gtttcctacagtaaacacatagccaaccgaaccttggtggagaacatgactctgaggata
atggattcatatggaaacccaacaggccaggacctggacgggaaggtggtcgtctctata
aagagttctagtagaggcagcagcaaaaacatccctctgtttgaaggcaaaaccaacagc
gttcaatttaacttggttgatggaaaggcccacattactaggctggctgtgatggaggac
agccccggtgaagacggcagttcttacatcctagtcttcaaacctggagtgacaatggct
cccaggccgctggctgcttttgagctccccttccatttttacaatgatgcagagaaccaa
tgtaaaatgtctgcgctgtccaaggagaaagatgagctcactgttgctcttaatgaatat
caaaacatgttttctttacaatcccaattacttcagtcgctgaccaagtgccttgaggat
gcaagtaggaaacagaccgacctcagatgtgagctgaacaggaggaacgtgaaaatggaa
ccaactgtgtctatcccaaacgttgataggcttctggcagagaggaacgctgaagtctta
cggatccagagagtgcccacgagagtctgctccatccgtgataacttcagttcacagccg
gatgttttgggagtggtcggccacctggccttcgtgcaggatgacgatgctgcgagggtt
atctcctggcacatcaggggcgacatggactgtgtcgtcaccaaaaccatagcagcagca
cggaggatctatgactacaccagaggcaatcagcaggtcatgtccctcgacagtgtgtat
atgccaccaggggacagaccactgccacacataagaaatggctccatgctctttgatccc
cctgggaacccagtccacgccagagggctcctgatttaccgccaagacaaggagagctgc
gacatcgtgtttaaaaatttcctcggagataccatcctgattgatgacctggactctgca
aacatgtacagaaagacggtggtgcagaataggatgccgtgccccaccatcctgaccagg
cagggggacaggatcagtggcaacgggaagttcggaggtgcacagaataaagcaccacca
atcaacacattaaatgtgttcggagcccccccccctcagcattacaacactcttagggaa
caaataggcctgctcagtcagtaccggtcagttctgcagagcagggacgagtttgcaaag
gaacgtgaggattgcttaaaaacaatgaagtctactgaaactgtaaaaaagcagcaagac
atggaggagaaaaagaaacaactggaggtgattgagagacaacttgtgtcaacactggtg
agaccagggaaacggggtcctgaggatgctggggagacgtccggcatcgttacaaagagg
cagagatccacataa
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