Paenibacillus konkukensis: SK3146_03558
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Entry
SK3146_03558 CDS
T09860
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pkp
Paenibacillus konkukensis
Pathway
pkp03030
DNA replication
pkp03410
Base excision repair
pkp03420
Nucleotide excision repair
pkp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pkp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SK3146_03558 (ligA)
03410 Base excision repair
SK3146_03558 (ligA)
03420 Nucleotide excision repair
SK3146_03558 (ligA)
03430 Mismatch repair
SK3146_03558 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pkp03032
]
SK3146_03558 (ligA)
03400 DNA repair and recombination proteins [BR:
pkp03400
]
SK3146_03558 (ligA)
Enzymes [BR:
pkp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SK3146_03558 (ligA)
DNA replication proteins [BR:
pkp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SK3146_03558 (ligA)
DNA repair and recombination proteins [BR:
pkp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SK3146_03558 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SK3146_03558 (ligA)
MMR (mismatch excision repair)
DNA ligase
SK3146_03558 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SK3146_03558 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UQZ84312
LinkDB
All DBs
Position
complement(4130941..4132956)
Genome browser
AA seq
671 aa
AA seq
DB search
MTDALQAMKALIEEINHHNYLYYTLDQPGIADADYDKLYDKLVAMERETGIVLPDSPTGR
VGDQLLKGFDEHKHRARLWSLDKAQNHEDLTAWHTRAAKLVNDYNTRNPENPLPPLSFVV
ELKFDGLTLNLTYEHGRLVQAATRGNGVVGEGILAQVKTIKSVPLTIPYTDGVIEVQGEG
IMNLSVLEAYNQTAAEPLKNARNAAAGALRNLNPKVTAERKLNAYFYNIGYTDGLTFADH
REMVEFLRENRFRISPFVRYFDSIEEVAQELDAVVSMRNTFDFLIDGLVVKVSDMRTREA
LGYTDKFPRWAVAFKFEAEEAITTLQSVSWEVGRTGKITPVAKVEPVDIAGVTVQNCTLN
NIGDIERKNLKHALGSQVYIRRSNDVIPEILGKVTEEQDGEEIVFPEQCPSCGSPLELKG
AHLFCLNRLECRPQLIGRITHFASRDAMDIETFSIMTAEQLYQELGVRDPADLYGLTFDD
LIKLERFGEKKANNLLAAFEKSKQCDLASFLFALGIPNTGKTTTKVLADHYRSLDKLMEA
TAEELVLLQDIGDIVADSIVSFFRDPVMQRSIERLLQAGVNPVSEEAPVIMNAENPFFGK
TIVLTGTLSSMSRDEAAKKLEALGAKITGSVSKKTDIVVAGESAGSKLTKAQQLGIRIID
DEQELLQLLNG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgctctgcaggccatgaaagccctcatcgaagaaatcaatcatcacaactac
ttgtactatacgctcgatcagcccggcatcgccgatgcggattacgacaagctgtacgac
aagctcgtagctatggagcgggagaccggcatcgtgctgcccgattcccctacaggccgg
gtcggcgaccaactgctcaagggctttgacgagcataagcacagagcaaggctgtggagc
cttgataaagcgcaaaaccatgaggacttaacggcctggcacacgcgcgccgccaagctg
gtgaacgattataacacccgcaacccggagaatccgctccctccgctgtcttttgtcgtg
gagttgaaattcgacgggctgactttgaatttgacctatgagcacgggcggctcgttcag
gctgctacccgtggcaacggcgttgtcggcgaaggtatcctcgctcaggtcaagacgatc
aagtcggttcccctgacgatcccgtatacggacggagtgattgaggttcagggcgaaggg
atcatgaacctgtccgtgctggaggcttacaatcagacggccgcggagccgcttaagaac
gcccggaatgccgcggcgggcgctctgcgcaacctgaacccgaaagtgaccgcagaacgg
aaattaaacgcatatttctataacataggctataccgacggtttaacgtttgccgatcat
cgggagatggtcgagtttttgcgcgagaaccggttccgtatcagcccgttcgtgcgctac
ttcgattctatcgaggaagttgctcaggaactggacgccgtcgtatccatgcgcaacaca
ttcgattttctgatcgatgggctggtagtcaaagtcagcgatatgcgcacccgcgaggcg
ctcgggtatacggataaatttccgcgctgggccgtcgcattcaagttcgaagcggaggaa
gcgatcacaacgctgcagtcggtttcatgggaggtcggccgcaccggcaagatcactcct
gtcgccaaggtcgaaccggtcgatatcgccggtgtgacggtgcagaactgtacgctgaac
aatatcggcgacatcgagcggaaaaacttaaagcatgcgctcggcagccaagtgtacatt
cgccgctccaacgacgtcatccccgaaatattgggaaaagtgacggaggaacaggatggc
gaagagatcgtctttcccgagcagtgcccttcctgcggctcgccgcttgagctgaagggc
gctcacctgttctgtctgaaccggctggaatgccgtccgcagctgatcggccgtattact
catttcgcctcgagggacgcgatggatatcgagacgttcagcatcatgactgcggagcag
ctgtatcaggagctgggcgtgcgcgatccggccgatctgtacggtttgaccttcgacgat
ctgatcaagctggagcgcttcggcgagaagaaagcgaacaacctgctggccgccttcgaa
aaaagcaagcagtgcgacctcgcgtccttcctgttcgcgctcggcattccgaatacgggc
aaaacgacgaccaaggtgctggccgatcattaccgcagtctggataagctgatggaggcg
acggccgaagagctggtcctattacaggatatcggcgacatcgtggccgacagcatcgtg
agctttttccgcgatccggtcatgcagcgcagcatcgaacggctgcttcaagccggagtg
aatccggtcagcgaagaagcgccggtcattatgaatgcagaaaatccattttttggcaaa
acaatcgtactgaccggaacgctctcttccatgagccgcgatgaagccgctaaaaagctg
gaagcattgggcgccaaaatcaccggcagcgtctccaaaaagacggatattgtcgttgcg
ggagaaagcgccggcagcaagctgaccaaggcgcagcagctaggcattcgcatcattgac
gacgaacaggagctgcttcagctgctgaacggataa
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integrated database retrieval system
