Priestia koreensis: IE339_01580
Help
Entry
IE339_01580 CDS
T08027
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pks
Priestia koreensis
Pathway
pks03030
DNA replication
pks03410
Base excision repair
pks03420
Nucleotide excision repair
pks03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pks00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IE339_01580 (ligA)
03410 Base excision repair
IE339_01580 (ligA)
03420 Nucleotide excision repair
IE339_01580 (ligA)
03430 Mismatch repair
IE339_01580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pks03032
]
IE339_01580 (ligA)
03400 DNA repair and recombination proteins [BR:
pks03400
]
IE339_01580 (ligA)
Enzymes [BR:
pks01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IE339_01580 (ligA)
DNA replication proteins [BR:
pks03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IE339_01580 (ligA)
DNA repair and recombination proteins [BR:
pks03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IE339_01580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IE339_01580 (ligA)
MMR (mismatch excision repair)
DNA ligase
IE339_01580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IE339_01580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
5_3_exonuc
BRCT_2
RNA_pol_A_CTD
Gly_reductase
CTD11
HNOB
Motif
Other DBs
NCBI-ProteinID:
UNL85260
LinkDB
All DBs
Position
284771..286777
Genome browser
AA seq
668 aa
AA seq
DB search
MDFEQAKTRVQELHELLNQYNYEYHVLDQPSVPDAEYDQRLHELIKLEQEYPELLVAHSP
TQRVGGQILDAFEKVEHRTPMLSLGNAFNEEDLRDFDRRVRQAVGDRFSYVCELKIDGLA
ISLRYENGYFVQGATRGDGTIGEDITANLKTIRSIPLHISDEHTLEVRGEAYMPKKSFEK
LNKVKEENGEMLFANPRNAAAGSLRQLDPKIAAKRSLDIFLYAMADAGKTGVRSHSEGLD
LLDQLGFKTNQNRRKCATIEEVLAYVEEWSAKRPDLAYEIDGIVIKVDSFDQQDELGTTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVQRASLHNEDLI
REKDIRLGDYVVVKKAGDIIPEVVNVLTEKRTGEEQEFSMPTHCPECESELVRLEGEVAL
RCINPSCPAQIREGLIHFVSRNAMNIDGLGEKVITQLFREELVHDVADLYKLTADQLTDL
ERMGEKSIENLLKAIAASKENSLEKLLFGLGIRHVGAKAAKTLAQTFETMENLKSATYDE
LVAVNEIGDKMADAIVTYFDQEEVHELLEELSSYGVNMTYKGPKLVNADEIDSYFAGKTI
VLTGKLEQLARNEAKAAIEELGGKVTGSVSKKTDLVVAGEDAGSKLTKAQELNIEVWSED
QLVQELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaacaagcaaaaacgcgtgtccaagagcttcatgaacttttgaatcagtat
aactatgagtatcatgttctcgatcaaccgagcgttcctgatgcagaatatgatcagcgt
cttcacgagcttattaagcttgaacaggagtatccggagcttttagttgctcattcgcct
acacagcgcgtaggtggacagattttggatgcctttgaaaaggtcgagcatcgtacgcca
atgctgagcctaggaaatgcttttaatgaagaggatttacgtgattttgatcgccgcgtt
cgtcaagcagtcggtgatcgtttctcctatgtatgcgagctaaaaattgatgggctagca
atttcacttcgctatgagaatggctactttgttcaaggtgcgacgcgcggagatggtacc
attggtgaggatattacggcgaatctaaaaacgattcgctcgattcctttacatattagc
gacgaacatacgcttgaagtacgcggtgaggcatacatgccgaagaaatcgtttgagaaa
ctaaacaaagtaaaagaagaaaacggtgagatgctgtttgcgaatccacgaaatgctgct
gctggttctcttcgtcagctcgatccgaagattgcagcaaagcgtagtctcgatatcttt
ttatacgcaatggcggacgctggaaagacaggtgtaaggtctcatagtgaaggcctagat
ctattagaccaacttggctttaaaacaaaccaaaatcgtcgtaaatgtgctacgatcgaa
gaggttttagcgtacgtggaagaatggagtgcgaagcgccccgatcttgcttacgaaatt
gatggaattgttatcaaagttgattcctttgatcagcaggacgagcttggtacgaccgcg
aaaagcccgcgctgggcaatcgcgtataaattcccagcagaagaagttgtgacgaagctt
ttagacattgagctgaatgtcggaagaacaggtgtaattaccccaacggctgtattagag
cctgtaaaagtagcaggaacgactgtgcaacgcgcatctctgcacaatgaggatttgatt
cgcgagaaggatattcgcctcggtgactatgtggtcgtgaagaaagcaggagacattatt
ccggaagttgtgaacgttctaacggaaaaacgaacgggcgaagaacaggaattctccatg
ccgacacactgtccagagtgtgagagtgagcttgttcgcttagaaggcgaagttgctctt
cgttgtatcaatccgagctgtccggcccaaattcgcgagggcctcatccactttgtttca
cgaaatgcgatgaatattgacggtctaggtgagaaggttattacgcagctgttccgcgaa
gaactggtccatgacgtagctgacctctataagctaaccgctgaccagcttacggattta
gagcgaatgggtgaaaaatcgattgagaacttgttaaaagcaattgcagcatcaaaagag
aattcgcttgagaagcttctattcggacttgggattcgtcacgttggagcaaaagctgcc
aaaacacttgcacaaacgtttgaaaccatggaaaatcttaagagtgccacatacgatgaa
ttggttgctgtgaatgaaattggcgataaaatggctgatgcaatcgtcacgtattttgat
caagaagaggtacacgagctgctagaggaattaagcagttacggtgtgaatatgacctat
aaaggtccgaagcttgtgaatgcggatgagattgattcgtacttcgccggaaaaaccatc
gttcttactggaaagcttgagcagcttgcacgtaatgaagcaaaagcggctattgaagag
ctcggtgggaaggtcacaggaagcgtaagtaagaaaacggatcttgtggttgctggtgaa
gacgcaggatcaaaattaacgaaagcacaggaattaaacatcgaagtgtggagcgaggat
caactcgttcaagaattaaataaatag
DBGET
integrated database retrieval system
