Planococcus kocurii: AUO94_12510
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Entry
AUO94_12510 CDS
T04200
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pku
Planococcus kocurii
Pathway
pku03030
DNA replication
pku03410
Base excision repair
pku03420
Nucleotide excision repair
pku03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pku00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AUO94_12510 (ligA)
03410 Base excision repair
AUO94_12510 (ligA)
03420 Nucleotide excision repair
AUO94_12510 (ligA)
03430 Mismatch repair
AUO94_12510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pku03032
]
AUO94_12510 (ligA)
03400 DNA repair and recombination proteins [BR:
pku03400
]
AUO94_12510 (ligA)
Enzymes [BR:
pku01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AUO94_12510 (ligA)
DNA replication proteins [BR:
pku03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AUO94_12510 (ligA)
DNA repair and recombination proteins [BR:
pku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AUO94_12510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AUO94_12510 (ligA)
MMR (mismatch excision repair)
DNA ligase
AUO94_12510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AUO94_12510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ALS79399
UniProt:
A0ABN4JXC6
LinkDB
All DBs
Position
complement(809799..811805)
Genome browser
AA seq
668 aa
AA seq
DB search
MDRLKAEQRVNELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVFPDSP
TQRVGGAPLSTVDKVTHERPMLSLSNVFDEEDLHEFDKRVRSGAGDKIEYVCELKIDGLA
VSLLYENGKFVKGATRGDGRIGEDITVNLRTIRTIPLKLKEAVSLEVRGEVFMPKKSFHA
LNEERGERGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYNLSNHDESL
DYLAGLGFKTNKERQVCTTVEEVLAYIKKWTDKRNDLPYEIDGIVIKVNQFLYQQELGFT
AKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNEDL
IKEKDIRIGDKVIIRKAGDIIPEVVAVILDQRTEEELPFEMPTHCPACDSELVRIEGEVA
LRCVNPQCPAQITEGLIHFVSRNAMNIDGLGEKVIEQLYREGLVHDISDIYKLTKEQLLE
LDRMGDKSASNLVAAIEASRSNSMEKLLFGLGIRHVGERGARILSEHFGTLAQLIAATKE
ELVEIHEIGEKMADSIVMYFDSEEVRALVERLHEANVNLTYTGTRVRIEEGANAFAGKKI
VLTGKLEQMTRQEASAQIEALGGKLSGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEA
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcttaaaagcagaacaacgtgtaaatgaattaaacgaaatgctccggaactat
ggtcatgcttattatgtactcgataaaccggccgttccggatgcaatatatgatcaatta
ctgaatgaattaatcgacttagaaacgctttatcctgatctggttttcccagattcacca
actcaacgtgttggcggagcaccactttcaactgtcgataaagtcacgcatgaacgtcca
atgctcagtttatctaatgtttttgacgaagaggatttacatgaatttgataaacgagta
cgcagtggtgcaggtgacaagattgagtatgtttgcgagctgaaaattgatggtcttgcg
gtatcactgttgtatgaaaacggtaaattcgtcaaaggagcaacacgcggagacggtcgt
attggtgaagatatcacggttaatctacgaaccatccgtactatcccactcaaattaaaa
gaagccgtctcgcttgaagtgcgcggcgaagtcttcatgcccaaaaaatccttccatgcc
ttgaacgaagagcgtggtgaacgaggcgaagagctattcgccaatccacgaaacgctgcg
gcaggatcgctacgtcaattggatcctaaaattgcagcgagccgaaatttggatgttttt
atttatggaattggtggcgacggggaaacatataatttatcaaaccacgatgaatccctt
gattatcttgcaggtctcggctttaaaacaaataaagaacgccaagtgtgtacgactgtt
gaagaagtattggcgtatattaaaaagtggactgacaaacgaaatgacttgccctatgaa
attgacggcatcgtcattaaagtcaatcaatttttataccagcaagaacttggctttaca
gcgaaaagtccaaaatgggcaacagcttataaatttccggcagaagaagtaatgacgact
gtacgcgatattgaattgagtgttgggcgaacgggagttgtgacaccaactgcgatatta
gatccagtatcggttgcaggaacgactgtgcaacgtgcttctttgcacaacgaagatttg
atcaaagaaaaagatattcgaattggcgataaagtgatcattcgaaaagcgggagacatt
attccagaagtcgtagctgtcattcttgatcaacgaactgaagaagaactgccttttgaa
atgccgactcattgtccggcatgtgatagcgagttagttcgcatcgaaggagaagttgcg
cttcgctgcgtcaatccgcaatgtccggcacaaatcacagaaggactcattcactttgtg
tcacgtaacgcgatgaatattgacgggcttggtgaaaaagtgattgagcaattgtaccgg
gaaggcttggttcacgacatttctgatatttacaagctaacaaaagaacaattgctagaa
ctagatcgaatgggtgacaagtctgcatccaacttagtagcagcgattgaggcttctaga
agcaattcgatggagaaattgttgtttggtctgggtatccgccatgttggcgaaagagga
gcgcgtattttatccgaacattttggaacgttagcacaattaatcgcagcaacaaaagaa
gaactagtcgaaatacatgaaattggcgaaaaaatggcggattctatcgtgatgtatttt
gatagtgaagaagttcgtgcattggtggaacgtttgcacgaagcgaacgtcaatctaact
tatacgggtacacgagtacgtatcgaagaaggcgcaaatgcatttgcaggaaagaaaatc
gttttgacaggtaagctggaacaaatgactcgtcaagaggctagcgctcaaattgaggca
cttggaggcaagctgtcaggcagcgtgagcaagaaaacagatttgcttattgcaggtgaa
gaagcaggttcaaagctcgataaagcgcgcgagcttaaagtagagatttgggacgaagca
cgtctcgttgaggaattgaacaaataa
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