Candidatus Planktophila dulcis: A1s21155_02035
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Entry
A1s21155_02035 CDS
T05051
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plak
Candidatus Planktophila dulcis
Pathway
plak03030
DNA replication
plak03410
Base excision repair
plak03420
Nucleotide excision repair
plak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A1s21155_02035
03410 Base excision repair
A1s21155_02035
03420 Nucleotide excision repair
A1s21155_02035
03430 Mismatch repair
A1s21155_02035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plak03032
]
A1s21155_02035
03400 DNA repair and recombination proteins [BR:
plak03400
]
A1s21155_02035
Enzymes [BR:
plak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A1s21155_02035
DNA replication proteins [BR:
plak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A1s21155_02035
DNA repair and recombination proteins [BR:
plak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A1s21155_02035
NER (nucleotide excision repair)
GGR (global genome repair) factors
A1s21155_02035
MMR (mismatch excision repair)
DNA ligase
A1s21155_02035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A1s21155_02035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
ASY11769
UniProt:
A0AAC9YT65
LinkDB
All DBs
Position
394816..396837
Genome browser
AA seq
673 aa
AA seq
DB search
MSNEARHRITELTQEIRDHQFKYYVLDAPSITDAAFDKLLKELEALEAKHPQLLEPDSPS
LGVGGGFATTFDQHDHIEKMMSLDNVFDNDELATWFDRVEKESPSPEYLCELKVDGLAIN
LLYENGQLTRALTRGNGVTGEDVTLNVKTIKGLPHTLSGKNIPSLIEVRGEVFLPVAAFN
QLNEELEEAGKPLFANPRNCAAGSLRQKDPRITASRALDVVVHGVGASEGISFSSQSDAY
AQLKSLGLPTSNRFKVCTSRKEVLDFIENYNIHRHDVEHEIDGVVIKVDAIAEQKKLGFT
SRAPKWAIAYKYPPEEVTTKLLDIKVSVGRTGRVTPFAFMEPVKVAGSTVTNATLHNQEE
IERKGVLIGDTVIIRKAGDVIPEVLGPVLDKRTGKETAFVMPTQCPECASDLRAITEGDV
DIRCPNTRSCPAQLRERIYYIGSRAALDIDVLGYEAAVALLHDAIIVDEADIFSLTENEL
MKSSFFTKKDGGKGKNLEKLLEALEEAKNRPLWRTIVALSIRHVGPTAAQALATNFGSMD
AISKASVAELADIDGLGDVIAQSVVEWFEIDWHRNIIKKWSDAGVAMVNATGEAKPQTLA
GLTFVVTGGLEGFTRDSIAETITAYGGKPSSSVSKKTDYVLVGSDPGSKLAKAQELGVTV
IDEARFLELLAGK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgaagctcgccatcgcatcacagaactcacccaagagatccgcgatcaccaa
tttaaatattatgttctagatgccccatccataactgatgctgcattcgacaaattactg
aaagagttagaagcgcttgaggcaaagcatccgcaactcctagagccagattctccatct
cttggtgttggtgggggatttgccaccacctttgatcagcatgatcacatcgagaagatg
atgagccttgataacgtctttgataacgatgaattagccacctggtttgatcgtgtggag
aaggaatctccttctcctgaatatttgtgtgagctcaaagtcgatggccttgccatcaat
ctgctctatgagaatggacagctcactcgtgcacttactcggggtaatggtgtgacgggt
gaagatgtgacgctgaatgtgaagaccatcaagggattgccccacacgctaagtggcaaa
aacattccttcactgattgaagtccgtggtgaagtgttcttaccggttgcagcttttaat
caactcaatgaagagttagaggaagctggcaagcctctctttgccaatccgcgcaactgc
gcagcaggttctcttcgacagaaagatcctcgcattacagcatctcgcgcactcgatgtt
gttgttcacggtgttggtgcaagtgaaggtatttccttctcttcgcaatctgatgcctac
gcgcagctcaaatctttgggcttgccaacatcaaatcgctttaaggtctgcacgagccgc
aaggaagttcttgatttcattgagaattacaacattcatcgccacgatgtcgaacatgaa
attgatggagtggttatcaaggtggatgcaattgctgagcagaagaagctcggctttaca
tcgcgcgcaccaaagtgggcaattgcctataagtatccacctgaagaagtcactacaaag
ctacttgatatcaaagtcagcgttggtcgcacagggcgcgtgacccccttcgcatttatg
gagcctgtcaaagttgcaggttcgacagttaccaatgcaacacttcacaaccaagaagag
attgaacgcaaaggcgtcctcatcggtgacactgtcatcatccgcaaggccggtgatgtc
atccctgaagtattgggaccagttcttgataagcgcacaggtaaagagacggcatttgtg
atgccgacgcagtgtccagaatgtgcctccgatcttcgcgcaatcactgaaggcgatgtg
gatattcgttgtcccaatacacgaagctgtcctgcacagctgcgcgagcgtatttactac
atcggctcacgtgcagccctcgatattgatgtactgggatatgaagcagcagttgcacta
ttgcacgatgcgatcattgtcgatgaagcagatatcttctcactcaccgaaaatgagttg
atgaagtcatctttctttactaagaaagatggcggcaagggtaagaaccttgagaagtta
ctggaagctttggaagaggcaaagaaccgaccactgtggcgcaccatcgttgctctctct
attcgccatgtggggccaactgcggcgcaagcacttgctaccaattttggaagtatggat
gcaatttccaaagcttcagttgcagaacttgcagatattgatggcctgggtgatgtcatt
gcccaatctgttgttgaatggtttgagattgattggcatcgcaacatcatcaagaagtgg
tctgatgcaggtgttgcaatggtcaatgcaacaggggaggccaagccacagacacttgca
gggctcacctttgttgtgacaggcggccttgaaggattcacgcgagattccatcgctgaa
acgattaccgcttatggcggaaagccttcatcttctgtttcaaagaagaccgattatgta
ttagtaggcagcgaccctggatcaaagctggctaaagctcaagagttaggcgtcacagtc
atcgatgaagcgcgctttttagaacttcttgcaggtaagtag
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integrated database retrieval system
