Plantibacter sp. PA-3-X8: EAO79_12240
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Entry
EAO79_12240 CDS
T05731
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plap
Plantibacter sp. PA-3-X8
Pathway
plap03030
DNA replication
plap03410
Base excision repair
plap03420
Nucleotide excision repair
plap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EAO79_12240 (ligA)
03410 Base excision repair
EAO79_12240 (ligA)
03420 Nucleotide excision repair
EAO79_12240 (ligA)
03430 Mismatch repair
EAO79_12240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plap03032
]
EAO79_12240 (ligA)
03400 DNA repair and recombination proteins [BR:
plap03400
]
EAO79_12240 (ligA)
Enzymes [BR:
plap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EAO79_12240 (ligA)
DNA replication proteins [BR:
plap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EAO79_12240 (ligA)
DNA repair and recombination proteins [BR:
plap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EAO79_12240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EAO79_12240 (ligA)
MMR (mismatch excision repair)
DNA ligase
EAO79_12240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EAO79_12240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
Auto_anti-p27
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AZH83585
LinkDB
All DBs
Position
2578950..2581277
Genome browser
AA seq
775 aa
AA seq
DB search
MANSTGQTLQQASTEAEELTSRILELRDAYYERDESLASDEEYDAMLRRLEELERLFPEL
QSQDSPTQTVGGRAETTLFAPVTHLERMLSLDNVFSIEEFLAWAAKVERDAGGSVQYLCE
LKIDGLAINLRYERGRLVSAATRGDGVVGEDVTENVRYIRSIPERLTSSDPGVEFPEVVE
VRGEIFFPVEAFRELNANQAAAGERVFANPRNAASGSLRQKAESKNPAQLALMHDRLGRL
QMLVHGIGAWEQPPVARQSQVYELLHSWGLPTSSHYRVHDEATGAAEFIEYFGAHRDSVE
HEIDGVVVKVDDLALHGELGATSRAPRWAIAYKYPPEQVNTKLLDIVVSVGRTGRATPFA
VMEKVLVAGSEVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLGPVVELRDGSERE
FVMPEHCPECGTPLAPAKEGDIDLRCPNARSCPAQVRGRVEHIGSRGALDVEALGEVAAA
ALTQPVEPAEPPLTTEAGLFSLTMADIFPVTVIVRDNETGLPKLNEDGSEKRVTPFRRRR
AKRDGVHDPAAAEFDGDESSVPSKNAIELLANLDGAKTRPLARLLVALNIRHVGPVAARS
LAEYFGSLDAIRAATRDELAEVDGVGGIIADALIAWFEVDWHREIVEEWTAAGVQWATPG
HPGPGAAVAAGGVLSGVTVVATGSLEGFTREGALEAIVQAGGKAASSVSKKTDFVAAGPG
AGSKLAKAEALGLRIIDAEQFALLVSEGPAALGEPEAPAADEAEGAASADEVPTD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaacagcaccggacagaccctccagcaggcatcgaccgaggccgaggaactcacc
tcgcgcatcctcgagcttcgcgacgcgtactacgagcgcgacgagtcgctcgcctccgac
gaggagtacgacgcgatgctccgtcggctcgaggagctcgagcgtctcttccccgagctg
cagagccaggacagccccacccagaccgtcggcgggcgtgccgagaccacgctgttcgcc
ccggtcacccacctcgagcgcatgctcagcctcgacaacgtcttctcgatcgaggagttc
ctcgcctgggccgccaaggtcgagcgcgacgccggagggtccgtccagtacctctgcgaa
ctgaagatcgacggcctcgccatcaacctccggtacgagcgcggccgcctcgtgagcgcg
gccacgcgcggcgacggcgtcgtcggcgaggacgtcacggagaacgtgcggtacatccgt
tccatccccgaacgcctgacgtcgtccgaccccggggtcgagttcccggaggtcgtcgaa
gtccggggcgagatcttcttcccggtcgaggccttccgcgaactgaacgccaaccaggcg
gccgccggtgaacgggtcttcgccaacccgcgcaacgcggcgagcggttccctgcgccag
aaggcggagagcaagaacccggcccagctcgcactcatgcacgaccggctcggccgcctg
cagatgctcgtccacggcatcggcgcgtgggaacagccgcccgtcgctcggcagtcacag
gtctacgagctgctgcacagctgggggctcccgacctcctcgcactaccgggtccacgac
gaggcgaccggtgcggcggagttcatcgagtacttcggcgcccaccgcgacagcgtcgag
cacgagatcgacggcgtcgtcgtgaaggtcgacgatctcgcgctccacggcgagctcggc
gcgacgagtcgtgctccgcgatgggccatcgcctacaagtacccgcccgagcaggtgaac
acgaagctcctcgacatcgtcgtgagcgtcgggcgcaccggtcgcgccaccccgttcgcc
gtcatggagaaggtgctcgtcgccggcagcgaggtgcgtcaggcgaccctgcacaaccag
gacgtcgtgaaggcgaagggggtgctcatcggcgacaccgtcgtcctccggaaggccggc
gacgtcatccccgaggtcctcggcccggtcgtcgagctccgcgacggttcggagcgggag
ttcgtcatgcccgagcactgccccgagtgcggtacccccctcgcccccgcgaaggagggc
gacatcgacctgcgctgcccgaacgcgcggagctgcccggcgcaggtgcgcggacgcgtc
gagcacatcggctcccgtggcgcgctcgacgtcgaggcgctcggcgaggtggcggcagcg
gcgctcacccagccggtggagcctgcggaaccaccgctgacgactgaggccggactcttc
tcgctcacgatggccgacatcttcccggtcacggtgatcgtccgcgacaacgagaccggg
ctgcccaagctcaacgaggacggatccgagaagcgcgtcacgcccttccgccgccgacgc
gccaagagggacggcgtgcacgatccggccgcggccgagttcgacggcgacgagtcctcg
gtgccgtccaagaacgcgatcgaactcctcgccaacctcgacggcgcgaagacccgcccg
ctcgcccggttgctcgtggcactgaacatccgccacgtcggcccggtcgccgcccggtca
ctcgcggagtacttcggttcgctcgatgccatccgtgcggccacccgcgacgagctcgca
gaggtcgacggcgtgggcgggatcatcgccgacgccctcatcgcctggttcgaggtcgac
tggcatcgcgagatcgtcgaggagtggactgcggcgggcgtgcagtgggcgacacccgga
cacccggggccgggcgcggcggtcgcggccggtggtgtgctgtccggtgtcaccgtcgtc
gccaccggttcgctcgagggcttcacccgggagggtgcgctggaagccatcgtgcaggcg
ggcgggaaggctgcgtcgagcgtctcgaagaagaccgacttcgtcgccgccggcccgggt
gccgggtcgaagctcgcgaaggccgaagcactcggtctgcggatcatcgacgccgagcag
ttcgccctgctcgtctccgagggtccggcggcgctcggcgagccggaggccccggccgcg
gatgaggccgagggtgcggcgtccgccgacgaggtgccgacggactga
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