Planococcus halotolerans: DNR44_015980
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Entry
DNR44_015980 CDS
T06390
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
play
Planococcus halotolerans
Pathway
play03030
DNA replication
play03410
Base excision repair
play03420
Nucleotide excision repair
play03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
play00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DNR44_015980 (ligA)
03410 Base excision repair
DNR44_015980 (ligA)
03420 Nucleotide excision repair
DNR44_015980 (ligA)
03430 Mismatch repair
DNR44_015980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
play03032
]
DNR44_015980 (ligA)
03400 DNA repair and recombination proteins [BR:
play03400
]
DNR44_015980 (ligA)
Enzymes [BR:
play01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DNR44_015980 (ligA)
DNA replication proteins [BR:
play03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DNR44_015980 (ligA)
DNA repair and recombination proteins [BR:
play03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DNR44_015980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DNR44_015980 (ligA)
MMR (mismatch excision repair)
DNA ligase
DNR44_015980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DNR44_015980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
5_3_exonuc
BRCT_2
RNA_ligase
Neugrin
Motif
Other DBs
NCBI-ProteinID:
QHJ72004
LinkDB
All DBs
Position
complement(3183833..3185839)
Genome browser
AA seq
668 aa
AA seq
DB search
MDRIKAEQRVSELNELLGNYGHAYYVLDNPMVPDAVYDQLLNELIQLETLYPDLVFPDSP
TQRIGGAPISNFEKVTHDRPMLSLSNVFGEDDLREFDKRVRNGAGEKIEYVCELKIDGLA
VSLIYENGKFVRGATRGDGRVGEDITVNLRTIRSIPLKLKEPVSLEVRGEVFMPKKSFHK
LNEERGENGEEVFANPRNAAAGSLRQLDPKIAANRNLDVFIYGIGGDAENYGLDEHNESL
NYLQKLGFKTNSERKVCHSVEEVLAYIETWTEKRGNLSYEIDGIVIKVNSFLQQQELGFT
AKSPKWATAYKFPAEEVMTNLIDIELSVGRTGAVTPTAILDPVSVAGTTVQRASLHNEDL
IKEKDIRIGDKVIIRKAGDIIPEVVRAMIELRTGDEEPFRMPENCPACDAELVRIEGEVV
LRCVNPKCPAQITEGLIHFVSRNAMNIEGLGEKVIEQLYQEQLIADIADIYKLTKDQLLE
LDRMGEKSASNLIAAIDASRSNSMERLLFGLGIRHVGEKAARILSEHFGSMEKLMDAPLE
ELTAIHEIGDKMADAIVTYFDSEEVRALVERLAAENVNLSYTGKRVQVEAGSNAFAGKKI
VLTGKLEQLTRSEATERIEAMGGKLSGSVSKKTDLLIAGEEAGSKLDKALDLKIEVWNEQ
QLIEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtattaaagcggaacagcgggtaagtgaattaaatgaattgctcggtaactac
ggccatgcctattatgtgctggataatccaatggttcctgatgcagtttacgatcagctg
ctaaatgaattgatccaactggaaactttatatccggatctggtgttcccggattcaccg
actcaaagaattggcggggcaccgatttcaaattttgaaaaagtgacacacgaccgtccg
atgctgagtttgtcgaatgttttcggagaagatgacctgcgggaattcgataaacgcgtc
agaaatggtgcgggtgaaaagatagaatatgtctgcgagctgaagatcgacgggctcgct
gtttcacttatatatgaaaacggcaagtttgtccgcggcgctacgcgcggcgatggacgg
gtgggagaggatattacagtcaatcttcggaccatccgttcaattccattgaaattgaag
gaaccggtatcgcttgaggtgcgcggtgaagttttcatgccaaaaaaatccttccataaa
ttgaatgaagagcgtggcgaaaacggcgaagaagtttttgccaacccgcgcaatgcggct
gccggttcacttcggcagctcgatcctaaaatagctgcgaaccgcaatttggatgtcttt
atctatggcatcggcggggatgctgaaaattatgggttggatgaacataacgagtcgttg
aattacttgcagaaacttggctttaagacaaatagtgaacgcaaggtctgccacagtgtc
gaggaagttttagcgtatatcgaaacctggacagaaaaacgtggcaatctgtcatacgaa
atcgatggaatcgtcattaaagtcaatagttttcttcagcagcaggaacttggatttacg
gcgaaaagcccaaaatgggccactgcctataaatttcccgctgaagaagtgatgaccaat
cttattgatatcgaactcagcgtcggacgtacaggcgctgttacgccgaccgccattctg
gatcccgtatcagttgccgggacgaccgtccagcgcgcatctttgcataatgaagatctg
atcaaagaaaaagatatacgcatcggcgataaggtcattatccgaaaagcgggtgacatt
attccggaagtggtccgtgctatgattgaactcagaaccggtgatgaagaacctttccgc
atgcctgagaactgtccagcgtgtgatgcggaacttgtccggatcgaaggggaagtcgta
ctgcggtgcgtcaatccgaaatgtcctgctcaaattacggaagggttaatccatttcgta
tcgcgcaatgcgatgaatatcgaaggactcggtgaaaaagttatcgaacagctttaccag
gagcagttgattgcggatattgccgatatttataaattgacgaaagatcaattgttggaa
cttgaccggatgggtgaaaaatcggcatccaacctgattgcagcgattgatgcttcacgc
agcaactcgatggaacgtttattgttcggccttggcatccgccatgtcggcgaaaaagcg
gcacgtattctttctgagcatttcggttcgatggaaaaattgatggatgccccgctcgag
gaattgacggcgatccatgaaatcggcgataaaatggccgatgccatcgtcacttatttc
gacagcgaagaagttcgcgccttggtggaacgtttagccgctgaaaacgtcaatcttagc
tataccggcaaacgagtgcaggtggaagccggttcgaatgcctttgcaggcaagaaaatt
gtactgaccggcaaattggaacagcttacccgctcggaagcgacagaacgcatcgaagcg
atgggcggcaagttatccggcagtgtcagcaagaaaaccgatctgttgattgccggggaa
gaagcaggttccaaactggacaaagctttggacttgaagattgaagtctggaatgagcag
caattgatagaagaattgaacaaatga
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