Palleronia sp. LCG004: RVY76_04335
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Entry
RVY76_04335 CDS
T09465
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plcg
Palleronia sp. LCG004
Pathway
plcg03030
DNA replication
plcg03410
Base excision repair
plcg03420
Nucleotide excision repair
plcg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plcg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RVY76_04335 (ligA)
03410 Base excision repair
RVY76_04335 (ligA)
03420 Nucleotide excision repair
RVY76_04335 (ligA)
03430 Mismatch repair
RVY76_04335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plcg03032
]
RVY76_04335 (ligA)
03400 DNA repair and recombination proteins [BR:
plcg03400
]
RVY76_04335 (ligA)
Enzymes [BR:
plcg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RVY76_04335 (ligA)
DNA replication proteins [BR:
plcg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RVY76_04335 (ligA)
DNA repair and recombination proteins [BR:
plcg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RVY76_04335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RVY76_04335 (ligA)
MMR (mismatch excision repair)
DNA ligase
RVY76_04335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RVY76_04335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WOI57025
LinkDB
All DBs
Position
902030..904318
Genome browser
AA seq
762 aa
AA seq
DB search
MAHAKAGDAGRTEADAQGPDTLDAAGAEAELARLADLLVRADAAYHRDDAPTLSDAEYDA
LKRRNREIEDRFPALKRVDSPSERVGATPSEGFSKVRHSQRMLSLGNAFDEDDVGEFERS
VRSYLGFGPEAELDFVAEPKIDGLSLSLRYENGKLVQAATRGDGQVGENVTDNARTVASI
PQTLDGAPDILEVRGEVYMSHRDFAALNARQEEAGQKVFANPRNAAAGSLRQLDSRITAS
RPLAFFAYAWGEVSEVPGETQIEVLARLADLGFVVNDRTVICRDPAEMIAHYDKIAEDRH
GLGYDIDGVVYKVNDLALQRRLGTRSTTPRWAIAHKFPAELAWTRLERIEIQVGRTGALS
PVARLDPVTVGGVVVSNATLHNEDYIAGRDNRGAPIREGRDIREGDLVQVYRAGDVIPKI
ADVDVDKRPKGAEPYVFPEECPDCGSDAIREPGDSVRRCSGGLICPAQAVERLKHFVSRA
AFDIEGLGAKLVEDLYREEWIREPADIFELEARYGPGNARQLSKRDGWGEKSAANLYRAI
EEKRRIPLSRLIFALGVRHVGEVAAADLARHYGSWANFVAACDAAAPAALRHAEAEEAVA
AERATAAAENRRAQVAARSKAVWQAEPDISEAASAWNEMTAIDGIGQVVAQALATTFAQT
RERASIDRLVDHLDIEDEAAIGVTDSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSG
SVSGKTDLLVAGPGAGSKAAKAAELGVQVLDEDGWRALIGEA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggcccatgcgaaggccggcgatgccggcaggaccgaggcggatgcgcagggaccggac
accctcgatgcggccggggccgaggcggagctcgcccggctggccgatctgctggtccgt
gccgatgccgcatatcaccgtgacgacgcgccgaccctctccgatgccgaatacgacgcg
ctgaagcgccgcaatcgcgagatcgaagaccggtttccagcactgaaacgggtcgactcg
cccagcgaacgcgtgggcgcgacaccttccgaaggtttttcaaaggttcgccactcgcag
cggatgctgtcgctcggaaacgcgtttgacgaagacgacgtgggggagttcgagcgctcg
gttcggtcgtatctggggtttggcccggaggcggaactcgacttcgttgccgagcccaag
atcgacgggctttctctgtcgctgcggtacgagaacggtaaactcgtccaagctgccact
cgcggtgacgggcaggtcggagagaacgtcaccgacaatgcccgcacggtcgcctcgatt
ccccagacgctcgacggcgcgcctgacatcctcgaagtgcgcggcgaagtgtacatgagc
caccgcgatttcgcggctctcaacgcacggcaggaagaggctggtcagaaagtcttcgcc
aacccgcggaatgccgcggcaggatcgctcagacagcttgattcccgtattacggcatcg
cggccgctcgccttcttcgcctatgcatggggggaggtatccgaagtgccgggcgagacc
cagatcgaagtcttggcccggcttgctgacctcggtttcgtcgtgaacgaccgcaccgtc
atctgtcgcgatccggccgagatgatcgcccactacgataagatcgccgaggatcgtcac
gggctcggctacgatatcgacggcgtggtctacaaggtgaacgaccttgcgttgcagcgc
aggctcgggacacgatcgacgactccccgctgggcaatcgcgcacaagtttcccgccgag
cttgcctggacgcggctcgaacgcatcgagatacaggtggggcgcaccggcgcgctcagc
cccgtcgcgcgcctcgaccccgtgaccgtcgggggggtcgtggtatcgaatgcgaccctt
cacaacgaggattacatcgccggccgcgacaatcgcggtgcgccgatccgggaggggcgc
gacattcgcgaaggggatctggttcaggtctatcgcgctggggacgtcattcccaagatt
gccgatgtcgacgtcgataagaggccgaaaggtgcggaaccctacgtgttccccgaagaa
tgccccgattgtggatccgacgcgattcgcgaaccgggcgattccgtccgccgctgttcg
ggcggtcttatctgccccgcgcaggcggtcgaacggctgaagcacttcgtgagtcgggcg
gccttcgatattgaaggactcggggcgaaactggtcgaggatctctatcgcgaagagtgg
atacgggagccggctgacatcttcgagctggaagcccgctatggcccgggcaacgcccgc
cagctgagcaaacgcgatggctggggcgagaagagcgctgcgaacctttaccgtgcgatc
gaggagaaacggcgcattcctctgtcgcgcctgatcttcgcgctcggggtgcggcatgtg
ggcgaggtcgcggccgctgatctcgcgcggcattacggcagctgggcgaacttcgtcgct
gcttgcgacgcggccgcgccggcggctctgcgccatgccgaggccgaagaagcggttgcc
gcggaacgcgcgacggccgcggccgagaaccggcgtgcgcaggtggctgctcggtcgaag
gcagtatggcaggcagagccggacatttccgaagcggcgagcgcctggaacgagatgact
gcgatcgacgggatcgggcaggtcgtggcgcaggccctcgcgacgactttcgcgcagacg
cgcgagcgggcctccatcgaccggctggtcgaccatctggacatcgaggatgaggcggca
atcggtgtgaccgacagtcccgtcgcgggcaagacggtcgtcttcaccggcaccctcgaa
aagatgacacgggccgaggcaaaggcgcgggccgaagcgctcggtgcgaaggtgtctggg
tccgtctcgggcaagaccgacctcctggtcgccgggccgggagcggggtcaaaggctgca
aaggctgccgagcttggcgttcaggtgctggacgaggatggctggcgcgcgcttatcggc
gaggcatga
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