Pleionea litopenaei: Q9312_02395
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Entry
Q9312_02395 CDS
T09336
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plei
Pleionea litopenaei
Pathway
plei03030
DNA replication
plei03410
Base excision repair
plei03420
Nucleotide excision repair
plei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q9312_02395 (ligA)
03410 Base excision repair
Q9312_02395 (ligA)
03420 Nucleotide excision repair
Q9312_02395 (ligA)
03430 Mismatch repair
Q9312_02395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plei03032
]
Q9312_02395 (ligA)
03400 DNA repair and recombination proteins [BR:
plei03400
]
Q9312_02395 (ligA)
Enzymes [BR:
plei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q9312_02395 (ligA)
DNA replication proteins [BR:
plei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q9312_02395 (ligA)
DNA repair and recombination proteins [BR:
plei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q9312_02395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q9312_02395 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q9312_02395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q9312_02395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
MRB1590_C
RNA_pol_A_CTD
Zn_ribbon_PADR1
Motif
Other DBs
NCBI-ProteinID:
WMS87785
UniProt:
A0AA51RUK1
LinkDB
All DBs
Position
542516..544531
Genome browser
AA seq
671 aa
AA seq
DB search
MSESVIQRVESLRHIIDEHNYAYYVLDEPSIPDAEYDRLLRELQQIESQHPDLITPDSPT
QRVGAKADTEFEKVEHLIPMLSLDNVFSLEELDAFNRRLDERLTNDSHREFVCEPKLDGL
AVSLLYENGILTRAATRGDGAVGENITLNVRTIKSVPLKLRGDFPRKVEVRGEVFMTLKA
FNTLNDNARENQEKVFANPRNAAAGSLRQLDPAITAKRDLSIYIYSLGLAEGVELAPTHF
DRLNQIRSWGLPVCPEVKLKKGKSECSEYYQAILEKRGQLPYEIDGVVYKVNNIEDQEQL
GFVARAPRWATAHKFPAQEETTILKQVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
MDEIHRLDVHEGDTVIIRRAGDVIPQVVSVVLERRPEGASPISMLTECPVCHSSVEREEE
QAIYRCTGGLFCAAQRKEAIKHFSSRKAMNIDGLGDKLVEQLVDADKIKNIADLYRLSED
DILDLDRMAEKSAKKLIHAIEASKKTTLAKFIYSLGIREVGEVTAMTLANELAEIQSISD
ATEEQLVALPDIGPIVARHICAFFDNEENRSVINQLLELGVYWPKVTPVDDLPQPLKGQV
IVLTGTFETMGRNEAKEKLIALGAKVSGSVSSKTSVVFAGPGAGSKLTKAQDLGVEVKDE
QALLAILEQYQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatctgtaattcaacgtgtcgagtccttacgacatattattgacgaacacaat
tacgcctattatgttttagatgagcctagtattcctgatgcagaatacgacaggctgctt
cgtgaactccagcaaattgagtcgcaacatcccgatctcatcacgcctgattcaccaacg
cagcgagtgggtgctaaagcggacacggagttcgaaaaggttgaacatctaatacccatg
ttatctcttgataatgtgttttctttagaagaactcgatgcgtttaatcgtcgactggat
gaacgtttaacaaacgattctcatcgagagtttgtttgcgagcctaaactcgatggttta
gcggtaagtttactgtatgaaaatggcattttaactcgagcggctactcgtggtgacgga
gccgtcggtgaaaatattactttgaatgttcgaacaatcaagagtgtgcccttgaaattg
cgtggtgattttcctcggaaggtggaggttagaggcgaagtctttatgacgcttaaggct
ttcaacacgctcaatgacaacgctcgagaaaatcaagagaaagtatttgctaatcctaga
aatgctgcagctggaagtctacgacaactagatccggcaatcacggcaaaacgcgatctt
tccatttatatctacagtcttggtttagccgaaggtgttgagctagcgccgacgcatttt
gatcgattgaatcaaattcgtagttggggacttcctgtctgcccagaagtgaagttaaaa
aaagggaagtcggaatgttctgaatactatcaagcaattttagagaaaagaggccaactg
ccttatgaaattgatggggtagtttataaagttaataatatagaagatcaagaacaacta
ggttttgtagctagagcaccgcgttgggcgactgcgcataaatttcctgcgcaagaagaa
acaactattttaaaacaggtagattttcaagtcggtcgtaccggtgcaataaccccggtc
gctcgactagagcccgtttttgttggaggcgttactgtcagtaatgcaacgttgcataat
atggacgaaatacaccgtctcgacgtacatgaaggcgatactgtcattattcgtcgagct
ggcgatgtgattcctcaagttgttagcgttgtacttgagcgtagacctgaaggtgcttct
cctatttctatgctaaccgaatgtccggtgtgtcattcttcagttgaacgcgaagaagag
caagcaatctatcgatgtactggtggactattttgtgctgctcaaagaaaagaagcgatt
aaacatttctcatctagaaaagcaatgaatattgacggactcggggataaactcgttgaa
caactggtcgatgctgacaagattaaaaacatagccgatctgtatcggttgagtgaagac
gatatcctagacttagatcgcatggcagaaaagtcagcgaaaaaactcatccatgcaatc
gaagctagtaaaaagacgaccttagctaagtttatctattcactaggtatccgcgaagtc
ggtgaagtgacagccatgacgttagctaatgaacttgccgagattcagagcattagcgat
gcaacggaagaacaattggttgcacttcctgatatcgggccaatcgtagctcgacatatt
tgtgcgttctttgataatgaagagaaccgctcagtcattaaccagttgcttgaactaggc
gtttattggccaaaggtaacgcctgtagacgatcttcctcagccattaaaaggtcaagtc
attgttttgacgggtacatttgaaacgatgggaagaaacgaagcgaaagaaaaattaatt
gctctaggcgctaaggtcagtggtagcgtatcgtctaagacatcggttgtatttgctggg
cccggcgcgggatcaaaactaacgaaagcgcaagatcttggtgttgaagtaaaagatgaa
caggctctattagcaattttggaacaatatcaataa
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