Paenibacillus lentus: EIM92_07015
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Entry
EIM92_07015 CDS
T05914
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plen
Paenibacillus lentus
Pathway
plen03030
DNA replication
plen03410
Base excision repair
plen03420
Nucleotide excision repair
plen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EIM92_07015 (ligA)
03410 Base excision repair
EIM92_07015 (ligA)
03420 Nucleotide excision repair
EIM92_07015 (ligA)
03430 Mismatch repair
EIM92_07015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plen03032
]
EIM92_07015 (ligA)
03400 DNA repair and recombination proteins [BR:
plen03400
]
EIM92_07015 (ligA)
Enzymes [BR:
plen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EIM92_07015 (ligA)
DNA replication proteins [BR:
plen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EIM92_07015 (ligA)
DNA repair and recombination proteins [BR:
plen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EIM92_07015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EIM92_07015 (ligA)
MMR (mismatch excision repair)
DNA ligase
EIM92_07015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EIM92_07015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
RNA_lig_T4_1
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AZK45986
UniProt:
A0A3Q8S486
LinkDB
All DBs
Position
1579884..1581893
Genome browser
AA seq
669 aa
AA seq
DB search
MDAMQTMERLVEQLNQYNYHYYTLDQPLVSDKEYDALYDQLTALEAETGIVLPDSPTGRV
GGELLKGFEPHRHLAPLWSLDKAQTEEHLVNWNNRVLRLIGDYNSKNPDTPLPAPTYVVE
LKFDGLTLNLTYTDGKLVQASTRGNGVVGEGILAQVKTIKSVPLTIPYNEGTIEVQGEGI
MNLSVLARYNETAAEPLKNARNAAAGALRNLNPRTTAERKLNAYFYNVGYSDNIQFSDHR
EMMSFLQDNRFKVNSYIEYFDDFTQVMKALEEIQQRRDSLDYLIDGAVIKVTDMRTREVL
GYTDKFPRWAVAYKFEAEETTTILESVSWNVGRTGKITPLAKVEPVELAGVTVQNCTLNN
AGDIERKNLKFALGTRVFIRRSNDVIPEILGKVTDEQDGAEIVVPETCPSCSFPLEQRGA
HLFCNNRFDCKPQIVTRITHFASRDAMDIETLSDKTAEQLYEELDVHEPADLYTIEFEQL
IKLERFGEKKANNLLEAIQKSKGRDLASFLYALGIPNTGKSTTKVLADHYRDLSAIMSAT
EEELMQLPDIGGIVAESIVTFFADPFMQAGINKMLELGVEAKAPEERAPVKDSFFTGKTV
VLTGTLHQLTRDEAKERLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKAKELGISVIEDE
NELVRLLNE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgatgcaaacgatggaacggctcgttgaacaactgaatcaatataactatcat
tactacaccttggatcagcctttggtaagcgataaggaatatgacgcgctgtacgatcag
ctgactgcgctggaggcggagacgggtatcgttctgcccgattccccgaccggacgggta
ggtggagagctgctgaagggcttcgagccgcatcggcatttagcgccgctgtggagtctg
gataaagcgcaaacggaggagcatctggtgaactggaacaatcgggtgcttcgtctgatc
ggagattataacagcaaaaatccggacaccccactcccggcacctacctatgtcgttgag
cttaaattcgatggactgacgttgaatcttacttataccgacggtaagcttgtccaggct
tcaacccgggggaacggcgtagtaggtgaagggattctcgcccaagtcaagacgatcaag
tcggtgccattgacgatcccttacaacgaagggacgattgaggttcagggagaaggcatc
atgaatctgtccgttctggccagatacaacgagactgccgctgaacctcttaagaatgcc
cggaatgccgctgcgggggcgctgcgtaatttgaatccgcgtacgacggctgaacgcaag
ctgaacgcatatttttacaatgtgggctactccgataacatccaattttccgatcatcgg
gagatgatgagcttcctgcaggataaccgttttaaagtgaactcgtatatcgagtacttt
gatgatttcacgcaggttatgaaggcgctggaggaaattcaacagcgtcgcgattcgctt
gactatctaatcgatggggctgtcattaaagtcacggatatgagaacccgcgaggtgttg
ggctataccgataaattcccgcgatgggcggtcgcttataaattcgaggccgaggagacg
acaacgattctggagtcggtatcgtggaatgtgggacgcacgggcaagattacgccactc
gccaaggtcgagcctgtcgagcttgccggcgtaacggttcagaactgcacattaaataat
gcgggggacatcgaacgtaagaacttgaagttcgctcttggtacacgcgtattcatccgt
cgctcgaatgatgtcatcccggaaattctcggaaaagtaaccgatgagcaggacggcgca
gaaatcgtagttccggaaacctgcccgtcctgcagtttcccgctggagcagcgaggcgct
catttattctgcaacaatcggttcgattgcaagccgcaaattgtgacgcgcattactcat
ttcgcatcccgtgatgcgatggatatcgagacgttaagtgataaaactgcggaacagctg
tatgaggagctggatgtccacgagccggccgatctatatacaatcgagtttgagcaattg
attaagctggagcgttttggtgagaagaaagccaataatctgctcgaggcgatccagaag
agcaaggggcgggatttggcttcgttcttgtatgcgttaggtattccgaataccggtaaa
tcgactacgaaggtgctggctgatcattatcgcgatctaagtgcgattatgtcagcgaca
gaggaagaactgatgcaactgccggatatcggcggcatcgttgccgagagcattgtgacg
tttttcgcggacccgttcatgcaggctggcattaacaaaatgctggagcttggtgtagag
gctaaggcgccggaggaacgcgccccggtgaaggactccttctttacgggcaagacggtg
gtgctcacgggaacgctgcaccagttgacccgcgatgaagccaaggagcggcttgaagcg
cttggcgctaaagtgacgggaagtgtatccaaaaagactgatcttgtcatcgctggagag
aaggccggcagtaagctgaccaaggccaaggagcttggcatttcggtcatcgaggacgaa
aacgagctcgttcgcttgctgaacgagtaa
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integrated database retrieval system
