Phaethon lepturus (White-tailed tropicbird): 104615980
Help
Entry
104615980 CDS
T08325
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Pathway
plet03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104615980 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
plet03400
]
104615980 (LIG4)
Enzymes [BR:
plet01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104615980 (LIG4)
DNA repair and recombination proteins [BR:
plet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104615980 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
104615980
NCBI-ProteinID:
XP_010284539
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPALQPSSKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMVAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQIHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSDIQNCILDGEMMAYNPETQTFMQKGNSFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVAGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPLPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
RNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLKDLRSKAEGKLVSKHLHIDEYDEPQEKKRKTVSRVKKTIGIAEQFKAPDLSHVSKV
SNMFEDVEFCVMTGTEKCSKPELESRIAECGGSVVQNPGPETYCVIAGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMCPDTNEHFAREYDCYGDSYTADTDVAQLK
EVFSRIKDNKVVPLDVISELEERYSWNSCQLSIFRGNAIYVDCYAVVNDPRTKIHGTTLS
IRALELRFYGAKVVSHLEEGISHVVIGKDHSRVNEVKALRRTFGKKFKIVSELWVTESVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgctttgcagccttcttcaaaaaaaacggtggcctctcacgtgcca
tttgcagatctgtgttctactctggagcgaatacagacatgtaaatctcgtccggagaaa
accaagtacttcaaggattttctggattcatggagaaaattccatgatgctctccatcaa
aaagagaaggacgtcacagattctttttatccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttgccaaaagatggaaaagatgctgcaaagcttttaaattacagaacaccg
gctggctcacgtggagatgctggagattttgcaatggtcgcatactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgtgata
gctaataataatgctgcgaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactagaacaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgttgaattacac
aatgtcacaactgatttggaaaaagtttgcagacagctgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatacacaaagatggagatgtgtataaatatttctcccgaaatgga
tttgactatactcagcagtttggcgcttccccccttgatggttcattaacaccatttatt
cataacgtatttaagagtgatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaaacgcaaacctttatgcagaaaggaaacagctttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttttgtgtgtttgatgtattgatggttaatgatcag
aagttgggtcacgaagtactgagcaaaagatacgaaatcttaagtagcgtatttaccccg
gtagcaggcaggatacatgttgtacataaaaaaagtgcccgaacaagaaaagaagtcatt
gatgctttaaatgaagcaatagataacagagaggaaggcattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggagaaggttggctaaaaatcaagccagaatatgtc
aatgggctgatggatgaactagaccttttaattgttggtggctactggggaaagggctct
cgtggtggaatgatgtctcattttctgtgcgctattgcagagacaccccttccaaatgaa
aaacctactgttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgatctaggtttgaaactggctaaacactggaagccctaccataggaaagaccctccc
cgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttaaaagatctcagaagcaaagcagaagggaagctggtatctaagcacctt
catatagatgaatatgatgagccacaagagaaaaaaaggaaaacagtgtcaagggtgaag
aagacaattggaatagctgagcaatttaaagctcctgatctttcccatgtaagcaaggtt
tcaaatatgtttgaagatgttgagttttgtgttatgacaggaacggaaaaatgctcgaag
cctgaactggaaagcagaatagccgaatgtggtggcagcgtggtacagaacccggggcca
gagacttactgtgtcattgcaggagctgagaatgtcagagtgaaaaacatcattgcttct
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgcta
gtgccttggcagccagcctttatgattcacatgtgtcctgacacaaacgaacattttgct
cgtgagtatgactgttatggagacagctacacagcagacacggatgttgcacaactcaag
gaagtgttctcaagaataaaagacaataaggtggtgcctttggacgtgatttcagagtta
gaagaacgttattcatggaacagttgtcagctcagtatattcagaggaaacgctatttat
gtggactgttatgctgttgttaatgatcccagaaccaaaattcatggaacaacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtctctcaccttgaagaggga
atctctcatgttgttataggaaaagatcattcccgggtaaacgaggtgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatctgagctgtgggtaacagagtcggtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa
DBGET
integrated database retrieval system
