Phaethon lepturus (White-tailed tropicbird): 104621184
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Entry
104621184 CDS
T08325
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
plet
Phaethon lepturus (White-tailed tropicbird)
Brite
KEGG Orthology (KO) [BR:
plet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plet03036
]
104621184 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
plet03400
]
104621184 (SMCHD1)
Chromosome and associated proteins [BR:
plet03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104621184 (SMCHD1)
DNA repair and recombination proteins [BR:
plet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104621184 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
Big_1
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104621184
NCBI-ProteinID:
XP_010285907
LinkDB
All DBs
Position
Unknown
AA seq
1929 aa
AA seq
DB search
MLLSATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSI
QIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVP
RSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSG
YIRNRKPSDSTHITSDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQ
LAHIYHYYIHGPKGNETNAVTKDVSPFNNIDIQISMFEKGKVPKMVNLREIKDDMQTLYI
NTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDDDCFIVEKG
ARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTN
KLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITT
RTDLPSKRMQSPWTVYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIFA
TGGEVQIALEPQALYAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDEL
LPNETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVVLHSPTGNKEIIS
HISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKP
EKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDIKPILEASGLTLQYEEITAGTKC
IIKGVTAKGCINSCQGKNFNLKVTLPGLKEDTQIFKIRLQPGPPRQLKVKPDSEILKIEN
GTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPVYSVDCSNAGTNILTGPVIHVQNI
KKDQMLKARIEILSCKDVPAVEKIIKLLPSSHVARLQILSMDGQKAIQIKHQDEINWLAG
DVMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPKINREQLIQGLLPDVKVPTSVKDVRY
CLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQLGEELQSEIDVMITDQYGNQV
QTVTSVCVNSLGVSGPGLDKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSD
FLRVNLTAGSPAKLQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPSPEPNVKISLT
KGNNLKIVPSNQQHKTDENGRANLGVISIHAPRGEHTLQLKASYNKTTLDCPIITLNVLP
DPEKPVRLNVKYDKNASFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEAQCSGTR
IPVDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGIYGIQFTFAMDKTNTLSSDQIIVEVV
PNDPVRLLPDSLPATPAVSNVRTLTSRTLVKDLYLHVMDEYNNHTGIDLVGRIIAKIKSP
NEDDDIEIPQFQGKVSTIEFPFDRGSAQINLVLAENSPGRDSTEYILVFEPDLPALKKPL
EPYRLSFMFYNDFKKQQQMASLTRERDQLSQSIGVYRNWFDTTNQLVTEMKCQVKEAETR
ETHLKNELKKHQIELPQTNTLQYVDSLIKQKILDQEGVMKQPRRTCTLPNYPKGNQDVLG
KIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETHGRQQVLPLDSIYKKTL
PDWNRPLPHLRNGKICFRPIGNPVFARDLLTFPDNVEQCQTVFGMLLGDTIIIDNLDAAN
HYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSG
QIDLLQQYRAAVVKLDNVNKDLDLHLQSLNTPEMQKKKQELAEQEKSLKLIEQKLGMTPS
DKVTESLLQPMMLDMSDSPIPSKRMRRETVKKLYSTEEWISSSTKKQQQQQPLQISPSEL
NGTPRKRKA
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttcagcaaccaaggagagaattgacttcctgccccactacgatacacttgtc
aaaagtggcatgtacgagtactatgccagtgaagggcaaaatcctttgccatttgccctt
gctgagttgattgacaattctctgtcagctacatcccgaaatactggtattcggagcata
cagataaaattgttatttgatgactcccaaggaaaaccagctgttgctgtgatcgataat
ggaagaggaatgacttctaaacagcttaacaactgggctgtatatagattgtcaaagttt
acaagacaaggtgacttcgagagtgatcattcaggatatgtacgtcctttgccagtgcct
cgtagtttaaatagtgatatctcatattttggagtcggaggcaaacaagcagtgttcttc
gttggacagtctgccagaatgataagcaaacctgcagattctcaggatgttcatgaactt
gtcctttctaaagaggattttgaaaagaaggagaaaaataaggaagcaatatatagcgga
tacattcgaaacagaaagccatctgactctactcacatcacaagtgatgatgaaagattt
cttcataacctaatattagaagaaagggataaagagagtttcacagcagttgtcattaca
ggtgtacaaccagatcatatgcagtacttgaaaaactactttcatctttggacaaggcag
ctggcacatatctatcactattatatccatggaccaaaaggaaatgaaactaatgctgta
acaaaagatgtaagccctttcaacaacatcgacattcagatttcaatgttcgaaaaagga
aaagtaccaaagatggtcaatcttagggagattaaagatgacatgcagacattgtatata
aatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggtatagtggaa
ggcatcatccggtatcatcccttcctgtatgataaagaaacgtaccctgatgatccatgt
tttccatcaaaattaaatgatgatgatgacgatgatgactgctttatagtagaaaagggt
gccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaataccatacaca
actgtggaagattttgactggtgtgctcctccaaagaagagaggattggcaccaattgaa
tgctacaacagaatttctggtgcattatttaccaatgataagttccaggtcagcacaaac
aaactcactttcatggatctggagctgaagctaaaagataagaatactctgttcacaaga
atcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtggctcaaa
gactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaataactaca
cgtacagatttaccatccaaaagaatgcagagtccttggacagtgtatgctgcaatagag
tgggatgggaaaacatacaaaactggacagctggtgaaaactgttaagactcttccaata
ttctatgggagtattgagaaattttttttgtatggagaccatgatggggatatatttgcc
actggaggagaggttcaaattgctttggaacctcaggctttgtatgctgaaatgaaaact
attccaatctcaaaactggacagaacagtgtctgacaaagctgttaaaaaatacatagag
gatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagatgagtta
ttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaaattttg
aataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttcaaagaaa
cttcttgttgaactcaaggttgttttacattcacctactgggaataaggaaataatttcc
catatcagtcagcatggaggcaaatggccgtactggtttaaaaaaatggaaaatcttcag
aaacttggtaactacaccttgaaactgcaagtagtattgaatgaaagtaatgcagacact
tatgcaggaaggcctctaccatctaaaatatttaaatttactattatagagggcaaacca
gagaaattttcggtgggtcttttggagcttccttttcgagttggagtaccttttaatatt
cctttggaattacaggacgaatttggtcatgcaacacagttgacaactgacattaaacca
attcttgaagctagtggattgacgttgcagtatgaagaaataactgcaggaacaaagtgc
atcattaagggtgtcactgctaaaggctgtataaatagttgccagggcaagaacttcaat
ctgaaggttactcttcctggtttgaaagaagacacacaaatctttaaaataagattgcag
cctggacctcctcgtcaattgaaagtaaaaccagattctgaaattctaaagattgaaaat
ggtacagctttcccctttcaggttgaagtactagatgagtcgggaaatataacagcacag
ccaaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctgtgtattctgta
gactgcagtaatgcaggaacaaacattttaactggtccagttatacatgtacagaatata
aagaaagaccagatgctgaaagcaaggattgaaatacttagttgtaaagatgtgccagca
gtggaaaagattattaaacttcttcctagcagtcacgttgcaagactacagatcttgagt
atggatggacaaaaagctattcaaattaaacatcaggatgaaattaattggcttgctggt
gatgtcatgcataaccttatatttcaaatgtatgatgaaggagaaagggagatacacata
actccagctgtggcagaaaaaatcaaggttaactggacacctaaaattaacagagaacag
ttgattcaaggattattacctgatgtaaaagtaccaacatcagtaaaagatgtacgttac
tgtctaattacttaccttgatgaccatgtgtctttggagagtgcgttcacagtcagacca
cttcctgatgaacccaaacacatcaaatgtaaattaaaaggaccaaatacactgcagttg
ggtgaagaactacaaagtgaaattgatgtaatgattacagatcagtatggaaatcaggtc
cagacagtgacatctgtgtgtgtaaattccctaggagtttctgggcctggacttgataaa
tcaaatttgaaaataacttggcaggaaagtactctaacaatgagagtaaaaggtattcgg
tttaaaccttgtttacttggaagcaaagaattgtgctttgcttggcgtgaattttctgac
tttctcagagtaaatttaactgcaggatcccctgctaaattgcagtttgtggattggcct
gagttagaaaagcctgttgcggtgattaatggtagagaattgcagaagccccttattgtt
cagctgtgtgatcaatggggaaatccatctcctgaacctaatgtcaaaatcagccttaca
aagggtaacaacttaaagattgttccttcaaaccagcaacataaaacagatgaaaatggt
agggctaacctgggagttattagtattcatgcacctaggggagagcacactttacagctt
aaagcctcatacaacaagaccacattagattgtcctataatcacattaaatgtcctacca
gatcctgagaaacctgtccgcttgaatgttaaatatgacaaaaatgcttcatttccagca
ggaggtaccttccctgattttatggttagtgttctttctgaagatgacaacattattaaa
aatattaatccagcacggatttctatgaaaatgtgggaagcacagtgcagcggaactagg
ataccagttgatgttacaacatttagctgtagtaaagtgaaggatgataaggaagatggc
ttcttttacttcagggataaagtggttccagagagagtgggcatttatggtatccagttt
acctttgcaatggataagacaaatacgctcagcagtgaccagattatagttgaagttgta
cctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtttccaat
gttcgaactcttactagccgtacactggtcaaggatttatacctccacgtaatggatgaa
tacaacaaccacactggaattgatctagttggcagaataatagcaaaaattaagagcccc
aatgaagatgatgatatagagatcccgcagtttcaggggaaagtcagtacaattgagttt
ccatttgacagaggatcagctcaaattaatctagtgctggctgaaaacagtcctggaaga
gatagcactgaatatattcttgtatttgagccagatctgccagctttgaaaaagcctttg
gaaccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacagatggca
tcacttacaagggagagagaccaattatctcagtccataggtgtttacagaaattggttt
gatactactaatcagcttgtaactgaaatgaaatgtcaggttaaagaagctgaaacaaga
gaaactcacctgaagaatgaactgaaaaagcaccagattgaattaccacagacaaacaca
cttcagtatgtggattctcttataaaacaaaagatattggatcaagaaggagtaatgaaa
cagccaaggcgaacttgtacgctcccaaactatccaaaaggcaaccaggatgttttaggc
aagattgcacacttagcacaaattgaggataatgaagcagcaaaagttatctcttggcat
ttggcaagtgacatggactgcgtagtcacactgactactgaagccgctcgctctattttt
gatgaaactcatggtcgacaacaggtgttaccccttgattctatttacaagaagacactt
cctgattggaacaggcctttacctcacttaagaaatggaaaaatctgcttcagacctatt
ggaaatcctgtatttgccagagatctgttaacatttccagataatgtagagcagtgtcaa
acagtgtttgggatgctcttgggtgacactatcattatagataacttggatgctgccaac
cattacagaaaagaggttgtaaaaattacacattgccctactttgctgactagggaagga
gacaggattcgcagcaatggaaaatttggaggccttcagaataaagctcctccaatggac
aaactcagaggaatggtatttggagcacccatgccaaaactttactctactttctctgga
cagatagatcttcttcagcaataccgggcagcagtggtgaaacttgacaatgtgaataag
gaccttgatttacatttgcagtcacttaacactccagaaatgcaaaagaaaaagcaggaa
cttgctgaacaagagaaaagtctcaagctaatagaacaaaaattgggtatgactccgtca
gataaagtcactgaatcattacttcagcctatgatgttagatatgtccgacagccccatc
ccctccaaaagaatgcgaagagaaacagtaaaaaaattgtatagcacagaagaatggatc
tcctcttccacaaagaagcagcagcaacagcaaccactgcagatatccccttcagaactt
aatggaactccacgaaagagaaaggcatag
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integrated database retrieval system
