Peromyscus leucopus (white-footed mouse): 114691417
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Entry
114691417 CDS
T07241
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X2
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114691417 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pleu03019
]
114691417 (Smg6)
03032 DNA replication proteins [BR:
pleu03032
]
114691417 (Smg6)
Messenger RNA biogenesis [BR:
pleu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
114691417 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
114691417 (Smg6)
DNA replication proteins [BR:
pleu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
114691417 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
DUF5539
Motif
Other DBs
NCBI-GeneID:
114691417
NCBI-ProteinID:
XP_028722552
LinkDB
All DBs
Position
8b:58153509..58403067
Genome browser
AA seq
1417 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKTKEASGSEEFKDEIVNDRDSSVANDMQLIKVCKELDSQQQNGPTDPENRQAQENFS
KTGGLEDRSLRIIKRIKKPDLQIYQPGRRLQTVTKESASRADEEEILNQVEQLRIEEGEC
KGKVVKEEAENKPDKAETEKTQTNDRARTAKGEKGKKMEKGEGTKKVNDDSVQGKPGSVK
RYSRSDKRRNRYRTCSTSSAGSNNSAEGAGLADSGCRRRRQDRTKERPRLKKQVSMSSTD
SLDEDRVDEPDGLGPRRSSERKKHLERNWSGRGEGEQKSNGKENRGTLRVTFDAETMNKD
SPMVRSARESVERIKSDKGPSSGGKGSEKQEFKHPNQELRGRGRGILILPAHTALSVSSV
GSPESTPLGPRLLFGSGTKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDE
ISPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPTSQYPYTGYSPLQYPVGPANGMYPGP
YYPGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRD
RISTEGMEKMAQLRTELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDP
NIENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYAL
ISAQRCMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRK
LDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEELELSPEQWRKGKKST
FRHVGDDTTRLEIWIHPSHSRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGK
LFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEE
CRSVIQEQAASLGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQDDQDDIKVSSFVPDLKEL
LPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTLADFCNILTAVNQSEVPLYKDP
DDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVAVLKYFLEALCGQE
EPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDDI
RELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLASL
ARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRD
SCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIRL
LREVVLLTDDRNLRVKALTRNVPVRDIPAFLMWAQVG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtgcggatctccgcgtccgagctgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggaattaaaggaacccaggcag
cgcaaagataataggcgccctgatttggaaatctataagcctggactttctcgactgagg
aacagacctaaaactaaggaggcttctgggagtgaggaatttaaggatgagattgtgaat
gacagagattcttctgttgcgaatgatatgcagcttattaaagtttgcaaggaattggac
agccaacagcaaaatggtcctacagatccagaaaatcgccaggcacaggagaatttctca
aagactggtggactagaggaccggagtctaagaatcatcaagagaattaagaaacctgac
ctgcagatctatcagcctggaaggcgtttgcagaccgtaaccaaagagtcagctagcagg
gcagatgaggaagaaatccttaaccaagtggagcagttgaggattgaagagggtgagtgt
aagggaaaagttgtaaaagaagaagctgagaataaaccagacaaagctgagacagaaaag
acccaaactaatgaccgagccagaactgccaagggagaaaagggaaaaaagatggagaag
ggggaggggacgaagaaggtgaatgacgactctgtccaggggaaaccaggctctgtaaag
cggtactcccgatcagacaagcgaaggaaccgctaccgcacttgtagtaccagctcagct
ggtagcaacaatagtgctgagggagctggcctggccgatagtggatgtcgccgacggcgc
caggatcggaccaaggagaggccacgactgaagaagcaggtgtctatgtcctcaactgat
tccttagatgaggacagagttgatgagcctgatggtttagggcccaggaggagctcagaa
aggaagaagcatttagaaagaaattggtctggccgaggcgagggtgaacagaaaagcaac
ggtaaagaaaaccgagggacccttcgagtcacttttgatgcagaaaccatgaataaagat
tcccccatggtgaggtcagccagggaaagtgtggaaagaataaagtctgacaaaggcccg
agcagtgggggcaagggctctgagaagcaggagttcaaacacccgaaccaagaacttcga
ggtcgtggtcgcggcattctgattctgccagcccatactgccctatctgtcagttcagtg
ggctctccagagtctacacctttgggacctcgacttttatttggatctggtactaaggga
tctcggagttggggccgtggaggcactacccgccgactatgggacccaaataatcctgat
cagaagcctgctctgaaaagccagacaccccagctacatttcttggacactgatgatgaa
atcagccctacatcttggggtgactcacgtcaggcccaagcatcttactataaatttcaa
aactctgacaacccctattactaccctcggacaccaggccctacctctcagtatccctat
acaggctatagccctctgcaatacccggtgggccctgcaaatggtatgtatccagggcct
tactacccaggctatcctgccccctcaggacagtatgtatgtagtcctctccctgccagc
accatgagccctgaggagatagagcagcacgtgcggaacatgcagcaacaggaactacat
aggcttctccgagtggctgacaaccaggaattgcagcttagcaacctgctttccagggac
cgcatcagtaccgagggcatggagaagatggctcagctcagaactgaactactgcagctg
tatgagcgctgtattctattagatattgaattctctgacaatcagaatgtagatcagatc
ctgtggaagaatgctttctatcaggtgattgagaaattcaggcagcttctcaaggatcca
aatattgagaacccagaacagattcggaacagactcctggagctcttggatgagggtagt
gatttctttgatagtttgcttcagaaactacaagttacttacaagttcaaactggaggac
tacatggatggacttgccattcgaagcaagcctttacgaaagacagtaaaatatgccttg
atcagtgctcaacgctgtatgatttgccaaggagatatctctaggtatcgggagcaagcc
aacgatacagcgaactatgggaaggcacgcagttggtacctgaaggcccagcatattgct
cctaagaatgggcgcccctataaccaactggctttattggcagtgtatacgaggaggaag
cttgatgctgtatattattatatgcgcagtttagcagctagcaaccctatcctgacggcc
aaggagagtctcatgagtttatttgaagagactaaacgaaaggctgaacagatggaaaag
aagcagcatgaggaacttgaactgagccctgagcagtggcgtaaaggaaagaagtctact
ttccggcatgttggggatgacactacacgcctggagatctggattcatccatcccattct
cggtcttcccagggcactgagtctgggaaggattctgagcaggagaatggtctgggcagc
ctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatgggaag
ctgtttacccggattgggatggagacattccctgcagtggctgagaaggtccttaaggag
ttccaagtgttgctgcaacatagcccatctcctattggaagtacccgtatgctacagctt
atgaccatcaacatgtttgctgtacataactcccaattgaaagactgcttttcagaggag
tgtcgctctgtgatccaggaacaagctgcatccttgggcttggctatgttttctctactg
gtacagcgctgcacatgcctacttaaggactctgccaaagctcagctgtcctctcctgag
gaccaagatgaccaagatgacatcaaggtgtcttccttcgtcccggacctgaaggagctg
ctccccagtgtgaaagtctggtcagactggatgcttggttacccagacacctggaaccct
ccacccacatctttggatctgcccttgcaggttgctgtggatgtgtggtcaacactggct
gacttctgtaacatactgactgcagtgaatcagtctgaggtgccactgtacaaggacccg
gatgatgacctcacccttcttatcctggaagaggatcggctcctctctggctttgtcccc
ttgctggctgcccctcaggacccctgctacgtggagaaaacctcggataaggttattgca
gctgactgcaaaagggtcgcagtactgaagtattttctggaagccctttgtggacaagaa
gagcctctgctggcgttcaagggtggaaaatatgtgtcagtggcacccgtcccagacacc
atgggaaaggaaatggggagccaagagggaaaacaactggaagatgaggaagaagatgtg
gtgattgaagactttgaggaagattcagaggctgaaggcagtgggggcgaggatgatatc
agggaacttcgggccaagaagctggctctagcaaggaagatagctgagcagcagcgtcgc
caagaaaagatccaggctgttttggaagaccagagtcagatgaggcagatggagctggag
atcagacccttgttcctcgtaccagataccaacggcttcattgaccacctggccagtctg
gcccggctgctggagagcaggaagtacatcttggtggtgcccctcatcgtgatcaatgag
ctggatggccttgccaaagggcaggagacagaccaccgggctgggggctatgcccgtgtg
gtacaagaaaaggcccggaaatccatcgagttcctcgaacggagatttgagagtcgggac
tcctgcctgcgggccttgaccagccgtggcaatgaacttgaatccatcgccttccgcagt
gaggacatcactggacagctgggtaacaacgatgacctgatcctctcctgctgcctgcac
tactgcaaagacaaggctaaggattacatgcccaccagcaaagaggagcccatccgcctg
ctgcgggaggtggtcctgctgactgatgaccggaacctgcgtgtgaaggcgctgacaagg
aatgtgcccgtgagggacatcccagccttccttatgtgggcccaggtgggctga
DBGET
integrated database retrieval system
