Peromyscus leucopus (white-footed mouse): 114696418
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Entry
114696418 CDS
T07241
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pleu03036
]
114696418 (Smchd1)
03400 DNA repair and recombination proteins [BR:
pleu03400
]
114696418 (Smchd1)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114696418 (Smchd1)
DNA repair and recombination proteins [BR:
pleu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114696418 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
114696418
NCBI-ProteinID:
XP_028729916
LinkDB
All DBs
Position
13:complement(27365638..27519503)
Genome browser
AA seq
2006 aa
AA seq
DB search
MAAKGASDAGGLSAGSGRDGGVDGCRTVYLFDRRGKDSELGERSLQVSERAGYAGFRASV
SQTIGISSEETFVITTTSRKEITCDNFDDIVKDGVTLYLLQSVDQSLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNVGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITN
DDERFLHNLIVEEKEKDSFTTVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGN
EINTAKEVGPSSNIDIEISLFEKGKTPKIVNLKEIKDDMQTLYINTASDSFEFKAHVEGD
GVVEGVIRYHPFLYDRETYPDDPCFPSKLRDEEDDDDCFILDKAARGKRPIFECFWNGRL
IPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYS
AIEWDGKIYKAGQLVKTVKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
IKTVPIAKLDRTVAEKTIKKYVEDEMAKLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVP
FNIPLELQDEFGHTTQLLSDIQPVLEASGLSLHYEEITKGPNCVIQGVVAKGPVNSCQGK
NFNLKVVLPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDNI
TAQPKLIVHCKFLGAPSLPVYTVDCSSSGTSILTGPAIQVQNIKKDQTLTARIEIPSCKD
VSPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMQNLIFQMYDEGERE
INITPSLAEKIKVNWTPEVNKEHLLQGLLPDVQVPTSVKDVRYCQVSFQDDHVSLESAFT
IRPLPDDPKHLKCELKGGKTVQMGQELQGEIVVTVTDQYGNQIPAFSPDSLSTLSIAGVG
LDNSNLKITFEANTQSISVRGIRFTPGPPGHKDLCFTWREFSDFIRVHLVSGPPTKLLLI
DWPELKEPLPVINGRQLQNPLIVQLCDQWDNHALVSHVKISLIKVNSLRLLPSNQQHKTD
DKGRANLGVFTVFAPRGVHTVQVKGVYNKSTIEGPTIKFMILPDPEKPIRLNVKYDKDAS
FIAGGIFTDFMVSVISEGGNVIKNINPTRISMKMWKLSSGVSRPPTNAETFSCNKIKDND
KEDGCFYFREKTIPNKVGAYCIQFDFMIDKTNMLNSEQVIIDVLPNEPMKLVPDIQPATP
AVSNVRSIASRTLVKDLHLSITDNYGNHTGMNLVGTVVATIKGFNEEDTDTPLFIGKVRT
LEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSRTLEPYSLPFMFYDDVKKQ
QQMAALTKEKDQLSKSIVMYRSLFDANKQLVDEMKCQVEEAKLKEVQLRNELKSHNIDIP
TTQQIPHIEALLEKKITEQNELKKKPRRSCTLPNYTKRSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHYRNGKLH
FKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRREVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVILGKEIDLIQQYRTAVCKLS
SVNKDLTNQLQYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTRKCSDSFCHSAKIELT
ECPIPAKRMRRESTRQNRRPKGDVPN
NT seq
6021 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaagggcgccagcgatgccggcggcctctcggcggggtctgggagggacggc
ggcgtcgacggctgtcggacggtgtacttgtttgaccggcgcgggaaggactcggagctc
ggggaacgctcgctgcaggtctcggagcgcgcgggctatgcggggttccgcgcttcggtg
tctcagacaattggcatttcatctgaagaaacatttgttattacaactacaagcaggaaa
gaaattacctgtgataattttgatgacattgttaaagatggagtcactctatacctgcta
caatcagttgaccagtcactgttaacagcgactaaagaaagaatcgacttcttacctcac
tatgacaccttggttaaaagtggcatgtatgagtattatgcaagtgaaggacagaatcct
ttgccatttgctcttgcagaattaatcgacaattcattgtcagcgactgctcgtaatgtt
ggtgttaggagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtc
gcagtgattgataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtat
aggttgtcaaaatttacaagacaaggtgactttgaaagtgatcattcaggctatgttcgg
ccagtaccagtaccacgcagtttgaacagtgatatttcctattttggtgttggaggcaaa
caggctgttttctttgttgggcaatcagccagaatgataagcaaacctgcagactcccag
gatgttcatgagcttgtgctttctaaagaagattttgagaaaaaggaaaaaaataaagag
gcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattacaaat
gatgatgaaagattcctacacaatcttattgtggaggagaaagagaaagacagctttact
actgtggttattacaggagtgcaaccagagcacatacagtacttgaaaaattatttccat
ctttggacacgacagttaacgcatatttatcattactatattcatggaccaaaaggaaat
gaaataaatacagctaaagaagttggaccttccagtaatattgatattgaaatttctttg
tttgaaaaaggaaagacacctaagattgtcaacctaaaggaaataaaagacgacatgcag
acattgtacataaacacagcatctgacagttttgagttcaaggctcacgtggaaggagat
ggtgtggttgaaggggttatccggtatcaccccttcttatatgatagagaaacgtaccct
gatgatccatgctttccatcaaaattaagagatgaagaagatgatgatgattgcttcatt
cttgataaagcagcgagagggaagagacctatttttgagtgcttttggaatggacggtta
ataccatatacatcagttgaagactttgactggtgtgctcctcctaagaagagagggctt
gccccaattgagtgctttaatagaatatctggtgcattattcactaatgacaaatttcag
gtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaacacc
ctttttacacgaattttaaatggacaggagcagagaatgaagattgacagagaatttgct
ttatggctgaaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaa
ggagtaattacccgtccagatcttccctctaaaaagcaaggcccttgggcgacatactca
gcaatagagtgggatggaaaaatatacaaagcaggacaactggtcaagacagtcaagaca
cttcctctcttttatggaagcatagtaagatttttcctttatggtgatcatgatggagaa
gtatatgctacaggaggtgaagttcagatcgctatggaaccccaggcgctgtatgatgaa
ataaaaactgtacccattgcaaagctggataggacagttgccgagaaaacaattaaaaaa
tatgtagaagatgaaatggcaaagctccctgatagattgtctgtaacttggcctgaagga
gatgaattattgccaaatgaaattaggcctgccggaaccccaattggtgcactgaggatc
gaaatactaaacaagaagggggaagcaatgcagaagctcccggggacaagtcacggaggg
tccaagaagctgctggtggaacttaaagttatactgcacacttcaagtggaaataaagaa
atcatttcacatatcagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aacatccagaaactgggtaattatacattgaaattacaagtggtattaaatgaaagtaat
gcggacacctatgcaggaagatcactaccatctaaagcaataaaattttctgttaaagag
ggcaagccagaaaagttttcatttggtcttcttgattccccttttcgtgttggagttcca
ttcaatattcctttggagttacaggatgaattcggtcatactacccaactattatctgat
attcaaccagttcttgaagcaagtggtctgtctttacattatgaagaaataaccaaaggc
ccaaattgtgtaattcaaggtgttgtagctaagggtccagttaactcttgtcaaggcaag
aattttaatctgaaggttgttcttccgggtttaaaagaagattcacagattttgaaaatt
agattgctacctggtcctcctcatcgactaaaagtgaaacctgactcggaaattctagtt
atagagaatggaacagccttcccttttcaggtggaagttgtggatgagtcagacaacata
acagcacaaccaaagctgattgtccactgtaagtttctaggtgctccaagcttaccagtc
tacactgtggattgcagtagctctgggaccagcatcctaacagggccagcaattcaagtt
cagaacattaagaaagaccagacgctgactgccaggattgagatacctagttgtaaagat
gtgtcacctgtggaaaagactatcaagttacttcccagtagtcacgttgctcgcctacag
atatttagtgtagagggacagaaggctatccagatcaaacatcaggatgaggttaattgg
atagcaggtgatgtaatgcaaaatctaatttttcaaatgtatgatgaaggagaaagagaa
atcaatattacaccatccttggcagaaaaaattaaagttaactggactcctgaggttaac
aaagaacatttgctacaaggtctgcttcctgatgtgcaagtaccaacatctgtgaaagat
gtgcgctactgccaggtttctttccaagatgaccacgtctctctggaaagtgcttttaca
ataagaccacttcctgatgatcccaaacatttaaaatgtgagttaaaaggaggaaaaacg
gtgcagatgggccaagagcttcaaggagaaatagttgttacagttacagatcagtatgga
aatcagatcccagcattttcaccagattctttatctacgttgtcaattgctggagttgga
cttgataactctaacttgaaaatcacttttgaggctaacacacagagcataagtgtacga
ggcatcagatttactccaggtcctcctggacataaggatctttgttttacttggcgagag
ttttctgactttattcgagtgcacctagtttctggacctccaaccaagctgctacttatc
gactggccagagctgaaagagccccttccagtgatcaatggaagacagttacagaaccct
ctcattgttcaactttgtgatcagtgggataatcacgcattagtctcacatgttaaaata
agtctcataaaagtcaacagtttaaggctattaccttcaaaccaacagcataaaacagat
gataaaggcagagccaatttgggggtattcactgtttttgctccaaggggagtacatact
gtgcaggttaaaggtgtctataataagagtaccatagaaggacctacaattaagttcatg
attcttccggaccctgaaaagcctattcgtctcaatgttaaatatgacaaagatgcctct
ttcatagcaggtggcatattcactgattttatggttagtgtgatctctgaaggtggtaat
gtcatcaaaaatatcaatccaacacgcatttccatgaaaatgtggaagctgtccagtggc
gtgagccggccaccaacaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaagaagatggctgcttctatttcagggaaaagacaatccctaacaaagttggggcatac
tgtatccagtttgattttatgatcgataaaacaaatatgctcaacagcgaacaggttata
attgatgttctgcctaatgaacctatgaagttggttcctgacatccaaccagctacccca
gctgtttctaatgttcgctcaattgccagcaggaccttggtcaaagacctacatctcagt
attacggataattatggtaatcatactggaatgaatttggttggcactgtagtagctacc
attaaaggtttcaatgaggaggacactgatactccactcttcatcgggaaagttaggaca
cttgaatttccctttgtgaatggttctgctgaaatcacaactctcgtgctggcagaaaat
agtcctggaagggatagtactgagtattttattatctttgagcctcggctgtcaacttta
tcaagaacgttggaaccatatagcctgccatttatgttttatgatgatgttaaaaagcag
caacaaatggcagcacttacgaaggaaaaggaccagttatcgaagtccatcgttatgtat
agaagtctcttcgatgccaacaagcagcttgttgatgaaatgaaatgccaagttgaagaa
gcaaaattaaaagaggttcagctgagaaatgaactaaaatcacacaatattgatattcct
acaacacaacagatacctcacattgaagcacttttggaaaaaaagataacagaacaaaat
gaactaaaaaaaaagcccagaagatcatgtactcttccaaactacactaaacgaagtgga
gatgttttgggaaagatcgcacatctcgcacaaatcgaagatgatcgagctgcaatggtt
atctcttggcatctggcaagtgacatggattgtgtggtcaccctgaccacagatgccgca
cgctctatctatgatgaaactcaaggtcgtcagcaggtgttgcctcttgattctatttat
aggaaaactcttccagattggaaaagacctctacctcattaccgaaatggtaaattacat
tttaaaccttttggagatccagtctttgcccgagatttgttaacattcccagacaatatt
gaacattgtgaaacagtttttggtatgctgttaggagacaccattattttggataatcta
gatgcagccaatcattatagaagagaggttgttaaaatcacacactgtcccacattactg
actagagatggagatcgtatcagaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggacaaacttcggggaatggtcttcggagctccagtaccaaaacagtgtgtg
atcttggggaaagaaatagatcttattcaacagtaccgtactgctgtgtgcaagctgagt
tctgtgaacaaggacctgactaatcagttacagtaccttcacactcccgatatgaagaag
aagaagcaagaacttgatgaacaggaaaaaagtctgaaactaatagagcaaaaactcggt
atgactcctacacggaagtgcagtgactcattctgtcactcagcaaagattgagttgaca
gagtgtccaattcctgctaaaagaatgaggagagaatcgactagacaaaatagaagacca
aaaggtgatgtaccaaactga
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