Peromyscus leucopus (white-footed mouse): 114704550
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Entry
114704550 CDS
T07241
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pleu
Peromyscus leucopus (white-footed mouse)
Pathway
pleu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pleu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
114704550 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pleu03000
]
114704550 (Kdm2b)
04121 Ubiquitin system [BR:
pleu04121
]
114704550 (Kdm2b)
03036 Chromosome and associated proteins [BR:
pleu03036
]
114704550 (Kdm2b)
Enzymes [BR:
pleu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
114704550 (Kdm2b)
Transcription factors [BR:
pleu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
114704550 (Kdm2b)
Ubiquitin system [BR:
pleu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
114704550 (Kdm2b)
Chromosome and associated proteins [BR:
pleu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
114704550 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
114704550 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
114704550
NCBI-ProteinID:
XP_028741698
LinkDB
All DBs
Position
23:complement(14134220..14261663)
Genome browser
AA seq
1453 aa
AA seq
DB search
MPPAPGSGFPGWPLWPPGLLLPQSRALQRLLSGPTSAPPAHAPSPLQGLHNQAPCGAGKA
RDITGVGAKESPQIAFPRLQTMQEASASCTDSWALGGVSPLFLLFSIFWHLRKVARIAVL
GCSGRAALAPVCGGPRVRGAPPSPLSNVPGSLVGSPQRAIDRQRYDENEDLSDVEEIVSV
RGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLVFRDKDGLGIKMPDPDFTV
RDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEH
LVKRPTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVKKYCLMSVKGCFTDFHIDF
GGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYT
FFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEICWY
VLERYVYCVTQRSYLTQEYQRELMLIDAPRKASVDGFSSDSWLEMEEESCEQQPQEEEET
EEEGDGAEKTPKPPADGPTSPTSTPSEEQENTGKKLKAPAMRFLKRTLSHESEESVKSTT
TPVDYPKTPTGSPSTEASTKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALL
EGVKNVLKEHVDDDPSLAITGVPVVSWPKKTPKNRVVGRPKGKLGPASAVKLAANRTTAG
ARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVC
GEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHA
GKTGKAYKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEPPRRRSDEHP
KKVPADSILRRKSDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSSHFSPRPPLGSSLSP
WWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRLALANKPLRRFKQEPEDDLPEAPPK
TRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSKELSKELNHEIQKTES
TLAHENHQPIKSEPESENEEPKRPLSHCERPHRFSKGLNGTARELRHPLGPGLRSPPRVI
SRPPASASPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLC
VCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSW
LINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRP
GQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVG
TTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQ
FGQVEEKLLQKLS
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgccgccggccccgggttccggcttcccgggttggccgctgtggccgccggggctgctg
ttaccgcagagccgggcgctgcagcggcttctctcggggcctacatctgccccgccagct
catgccccgagcccccttcaggggttacataaccaggctccctgtggagcgggcaaagct
cgggacatcactggggtgggggccaaggaaagcccccaaatagcatttccacggcttcaa
acgatgcaggaagcgagtgcttcgtgtacagacagctgggccttggggggtgtgagcccc
ctttttctgcttttcagcatcttttggcatttgcgcaaagttgctcggattgcagtgctg
gggtgcagtggacgcgcggctcttgcacctgtttgtggtgggcccagggtgagaggagcc
cccccaagtcctctcagtaatgtcccgggttctctggttgggtccccgcagcgtgcgatt
gaccgccagagatacgacgaaaacgaggacttgtcggacgtggaggaaatcgtcagcgtc
cgtggcttcagcctggaggagaagctccgtagccagctctaccagggggacttcgtgcat
gccatggagggcaaagattttaactatgagtacgtacagagagaagctctcagggttccc
ctggtttttcgggacaaggatggactaggaatcaagatgccagacccagatttcacagtc
cgagacgtcaaactcctcgtggggagtcgccggttggtggatgtgatggacgtgaacacc
cagaagggtaccgagatgagcatgtcccagttcgtgcgttactacgagacaccagaggca
cagcgggacaaactgtacaatgtcatcagcctcgagttcagccacacgaagctggagcac
ctcgtcaagcgccccactgtggtggacctggtggactgggtggacaacatgtggccccag
cacctcaaggaaaagcagacggaagccacaaatgcccttgcggagatgaaataccctaaa
gtgaagaagtactgtctgatgagcgtgaagggttgtttcactgatttccacattgacttt
ggaggcacctctgtgtggtaccatgttttccgtggtgggaagatcttctggctgatccct
ccaaccctgcacaacttggctttgtatgaggaatgggtactgtccggcaaacagagtgac
atcttcctgggagaccgcgtggaacggtgccaaagaattgagctgaagcaaggctacacg
tttttcatcccttctggttggatccatgcagtgtatacccctgtggactctctggtgttc
ggcgggaacatcctgcacagtttcaacgtgcccatgcagctgcggatctacgagatcgag
gacagaacccgggttcagcccaagttccgctaccccttctactatgagatatgctggtat
gtcttggagagatacgtgtactgtgtgacccagcgctcctacctcactcaggaataccag
agagaattaatgcttattgatgccccaagaaaagccagtgtagacggcttctcatcggat
tcctggctggagatggaggaggagtcctgtgagcagcagccccaggaggaggaggagacc
gaggaggagggggatggtgcagagaagacacccaagccacctgccgatggccccacctcc
cccaccagcaccccctcggaggaacaggagaacacagggaagaagctcaaagcccctgcc
atgcgcttcctcaagaggactttgtcccacgagtcagaggaaagtgtgaagtccacgacc
acgcccgtagactaccccaagacacccacaggctccccttccactgaggcctcgaccaag
tggacccacctgaccgaatttgaactgaagggcttgaaagccttggtggaaaaactagaa
tctcttccggagaataagaagtgtgtccccgagggcatcgaggacccccaggccctcctg
gaaggtgtaaagaatgtactgaaggaacatgtggatgatgaccccagcctggccatcact
ggagtccccgtggtcagttggcccaagaagactccaaagaaccgggtggtgggccggccg
aagggtaagctgggcccggcctcagcagtgaagttggccgccaaccgaaccacagcagga
gctcgccggcgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgtgga
gagtgccacttctgcaaggacatgaagaagtttgggggccccggacgcatgaagcagagc
tgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgccgtgtgccttgtgtgt
ggcgaggcagggaaggaggacacagtggaagaggaggaaggcaagtttaacctcatgctc
atggagtgctccatctgcaacgagatcatccaccctggatgccttaagattaaggaatca
gagggtgtggtcaacgatgagcttcccaactgctgggagtgtccaaagtgtaaccatgct
ggcaagaccgggaaagcctacaagcaaaagcgtggccctggctttaagtatgcctccaac
ctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaggaagggcaggag
cctgccaagcggaggagtgagtgtgaagagcctccccgacgcaggtcagacgagcacccc
aagaaggtgcccgcagatagcattctacgccgaaagtctgatgatgtgcacctaaggagg
aagcggaaatatgagaagccccaagagctgagtggacgcaagcgagcctcgacgcttcaa
acgtcccccggttcctctcacttctcgccgaggccccctctaggcagcagtctcagccct
tggtggagatccagtctcacttacttccagcagcagctaaaacctggcaaagaagacaaa
cttttcaggaaaaagcggcggtcctggaagaacgccgaggatcggttggcactggccaac
aaaccccttcggcgcttcaagcaggaaccagaggacgatctgcctgaggcacctcctaag
acccgggagagtgaccactcacgctccagctcacccaccgctgggcccagcactgaaggg
gctgaaggcccagaagagaagaaaaaggtgaagatgcgccggaaacggcggcttcccaac
aaggagctgagcaaagagctaagcaaggagctcaaccacgagatccaaaagacagagagt
accttggcccatgagaaccaccagcccatcaagtcagagcccgagagtgagaacgaggag
ccaaagaggcccctaagccactgcgagcgcccccaccgcttcagcaaggggctcaacggc
accgctcgggagctgcggcaccccctggggcctggcctgcgcagcccacctcgtgttatc
tcccggcccccagcctctgcgtccccacctaagtgcatccagatggagcgtcatgtgatc
cggccgccacccatcagccccccacctgactcgctgccccttgatgatggagcagcccat
gtcatgcacagggaggtgtggatggcagtcttcagctacctcagccaccaagacctgtgt
gtctgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcggttgtggacc
cgcattgacctgaaccactgcaagtccatcacgcccctgatgctgagtggcatcatccgg
cgacagcctgtctcccttgacctcagctggaccaatatctccaagaagcagctgagttgg
ctcatcaaccggttgcctgggctccgagacttggtgctgtcaggctgctcatggattgcc
gtctcagccctctgtagctccagctgcccactgctccggaccctggatgttcagtgggta
gaaggactgaaggatgcccagatgcgggacctcctgtccccacccacagacaacaggcca
ggtcagatggacaatcggagcaagctccggaacattgtagaactgcgcctagctggcctg
gacatcacagatgcctccctgcggctcattatccgccatatgcccctgctctccaagctc
cacctcagttactgtaaccacgtcactgatcagtccatcaacctgctcactgcagtcggc
actaccacccgagactctctgacagagatcaacctatcagactgcaataaggtcactgac
cagtgcctgtccttcttcaaacgctgtggaaatatctgtcatattgacctgaggtactgc
aagcaagtcaccaaggaaggctgtgagcagttcatagccgaaatgtctgtgagtgttcag
tttgggcaagtggaagagaaactcctgcagaaactaagttag
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