Panthera leo (lion): 122203305
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Entry
122203305 CDS
T10741
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
plez Panthera leo (lion)
Brite
Chromosome and associated proteins [BR:
plez03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122203305 (SMCHD1)
DNA repair and recombination proteins [BR:
plez03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122203305 (SMCHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
122203305
NCBI-ProteinID:
XP_042765930
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Position
D3:complement(41280860..41448587)
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AA seq
2002 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITKGPNCVIRGVTARGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFFGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHI
TSALADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGVGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLVKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHVMQVRAIYNKSNIEGPIIKLMILPDPEKPIRLNIKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQIIVDVLPNEPVKLVPKIQPATPAVS
NVRSVASRTLAKDLHLIITDDYNNQTGIDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFVKGSAEITNLVLAESSPGRDSTEYFIIFEPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQVSKNIIMYRSLFEASKQLLDEMKCRVEEAKLKEAQLQTELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKATGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKP
IGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKLNNVI
EDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKGNDSLRHPTKVEMTDCP
IPPKRMRREASRQNRIITKSDV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtgggaactggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgggaaaaggagtccgagctcggggaccgg
gtgctgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaagaaattacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactacttacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattacgcaagtgaaggacaaaatcctttgccattt
gctcttgccgaattaattgacaattcattgtctgctacttctcgaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgccgttgcagtaata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaagatgttcat
gaacttgtgctttcgaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaagaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacagtacttgaaaaattattttcttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggcaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggcgatggtgtagtg
gaagggattattcgataccaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgttttatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagattttgactggtgtactcctccaaagaagagagggcttgcgccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagacaagaacacccttttcaca
aggattttaaatggacaggaacagcgaatgaaaattgatagagaatttgctttatggctg
aaggactgtcatgagaagtatgacaaacaaataaaatttacatcttttaaaggaataatt
acacgtcccgatcttccttctaaaaagcagggcccctgggcgacatactcagcaatagaa
tgggatggaaaaatatataaagcagggcagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaagcactgtatgatgaagtaaaaact
gtgccaattgcaaagctcgataggacagttgctgagaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattatcagtaacttggcctgaaggagatgaattg
ttgccaaatgagattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaagggggaagcaatgcagaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattgcattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcaa
aagttggggaattatacgttgaaattacaagttgtattgaatgaaagtaatgcagacaca
tatgcaggaagaccgctaccatcaaaagcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttgcattatgaagaaataaccaaaggaccaaattgt
gtaattcgaggtgttacagctaggggccctgtaaactcttgtcaaggcaagaattttaat
ttgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttctggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagtttttcggggctccaaaccttccagtctacgttgta
gactgcagcagttctggaaccagtattttaacaggatctgcaattcaagtgcagaacatt
aaaaaagaccagactctgaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgcttcctagtagccatgttgcgagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatgttatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaatccatata
acatcagctttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccgacatctgtgaaagatatgcgctat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaaggcca
cttcctgatgagcctaaacatttaaaatgtgagttaaaaggaggaaaaacagtacaaatg
ggccaagagcttcaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatctgcgttgggaattgctggggttggacttgacagc
tcccatttgaaaactacttttcaggaaaatacacaaagtataagtgtaaaaggcatcaaa
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttctccttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaattacagaatcctctcattgtt
caactttgtgatcagtgggacaatccagcacctgtaccacaggtcaaaataagtcttgtg
aaagctaacaatttaaagcttactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatgtgatgcaggtt
agagccatttataacaaaagtaacatagaaggacctataattaagttaatgattcttccg
gaccctgaaaaacctattcgtctcaatattaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcatcaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaagaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtggggacctattgtatccag
tttggttttatgatggataaagcaaatattcttaacagtgaacagattatagttgatgtt
ctacctaatgaacctgtgaagttagttcctaaaatccagccagctacaccagctgtttca
aatgttcgttcagttgccagtaggaccttggccaaagatttacatcttattattacggat
gactacaataatcaaactggaattgatttggttggcactgtagtagctacaattaaaggt
tctaatgaggaagatacagatacaccactctttattgggaaagttagaacgctggaattt
ccctttgtgaaaggctcagccgaaatcacgaatctagtgctggcagaaagtagtcctgga
agagatagtactgaatattttattatatttgagcctcagctacctgctctatcaagaaca
ttagaaccatatatcctaccctttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccaggtatctaagaatattataatgtacagaagttta
tttgaagcgagcaaacagcttcttgatgaaatgaagtgccgagttgaagaagcaaaatta
aaagaggctcagttgcaaactgaactaaaaacacataatattgacattcctacaacacag
cagatgccgcacattgaagcacttttgaaaagaaaactatcagaacaggaagaactgagg
aaaaaacctagaagatcatgtactcttccaaactatactaaagccactggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgacagagccgcaatggttatttcttgg
catctggcgagtgacatggactgtgttgtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttataagaagact
cttccagattggaaaagacctctacctcattaccgaaatggaaaattgtattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagacaacgtagaacattgt
gaaacagtatttggtatgctgttaggagacaccattattttggataatttggatgctgcc
aatcattacagaaaagaggttgttaaaattacacactgccctacactgctcaccagagat
ggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaagctcctccaatg
gataaacttcggggaatggtatttggagctccaataccaaaacaatgcctggtcttagga
gaacaaatagatcttcttcaacagtatcgtactgctgtgaacaagttgaacaatgtgatt
gaggaccttaaccgtcagttagagtaccttcacactcctgatatgaagaagaaaaaacaa
gaacttgatgaacaagagaaaaatctgaaactaattgagcagaaactaggtatgactccc
acgcgtaagggtaatgactcattgcgccatccaacaaaggttgaaatgacagattgtcca
attcctcctaaaagaatgagaagagaagcttcaagacaaaataggattataaccaaatca
gatgtgtga
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