Pantoea ananatis LMG 5342: PANA5342_0115
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Entry
PANA5342_0115 CDS
T01728
Symbol
yicF
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plf
Pantoea ananatis LMG 5342
Pathway
plf03030
DNA replication
plf03410
Base excision repair
plf03420
Nucleotide excision repair
plf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PANA5342_0115 (yicF)
03410 Base excision repair
PANA5342_0115 (yicF)
03420 Nucleotide excision repair
PANA5342_0115 (yicF)
03430 Mismatch repair
PANA5342_0115 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plf03032
]
PANA5342_0115 (yicF)
03400 DNA repair and recombination proteins [BR:
plf03400
]
PANA5342_0115 (yicF)
Enzymes [BR:
plf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PANA5342_0115 (yicF)
DNA replication proteins [BR:
plf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PANA5342_0115 (yicF)
DNA repair and recombination proteins [BR:
plf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PANA5342_0115 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PANA5342_0115 (yicF)
MMR (mismatch excision repair)
DNA ligase
PANA5342_0115 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PANA5342_0115 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
RNA_ligase
HHH
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
CCF07508
LinkDB
All DBs
Position
131134..132894
Genome browser
AA seq
586 aa
AA seq
DB search
MFIVGLLLIFSTFSSLAALCPAWTSSRAVSEIAHLQQQLRQWDKAYFQQGRSLVSDADYD
SLQQRLNHWQRCFTQAADEYVPALPEDGTQWHPVAHTGVKKVRDKRALGYWMQARNDLWV
QPKIDGVAVSLIYRQGKLVSLISRGDGLHGEQWLAKARHIPAIPSVIDSQQGSIVLQGEL
FLKMTGHQQAVDGGRNARARVAGAMMSQADSPLLAQLGIFIWSWPDGPASMPERLARLSS
WGFDLASHWTQPVQDEEDAASWRERWFHAPLPFVTDGIVVHQAARPAGKYWQPGEGEWAI
AWKYQPPEVSSEVRSVDFSIGRTGKVAVVLNLQPVQLDDKTVRRVNIGSLKRWREQDVIA
GDQVTVSLAGQGIPRLERVIWRVAQRDYPEPPGSEHFTHLSCYTLTPDCHRQLLARLSWL
SQKFVLNIPGVQRSTWQRLLDTGCITHLFSWLTITPEQITAAAGISSERAQQIWHRFELT
RQQPLRRWVNALGIALPQKALRALADKEWEPLLARDVQTWQALPGVGARRAERIAAQFQD
AGLRKLITFLQQQGIPASSVFRVGIIEDGQAESKPQCQQAGKETEK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgtttattgttgggctgctactgatattcagcacgttttcttcccttgcggctttgtgc
cccgcctggacgtcatcgcgtgccgtcagtgagatcgcgcatttgcaacagcaacttcgg
cagtgggataaggcgtatttccagcaagggcgctcgctggttagtgacgcagactacgat
agcttgcagcagcggcttaaccactggcagcgctgttttactcaggctgcggatgaatat
gtgcctgccttgcctgaggacggtacgcagtggcatcccgttgcgcacaccggcgttaaa
aaagtacgggataaacgtgcgctgggttactggatgcaggcacgaaacgatctttgggta
caaccaaaaatcgatggcgttgccgtctctctgatctatcgacagggaaaactggtctcg
ctaatcagccgcggcgatgggttacacggcgagcagtggctggcgaaagcccgtcatatt
cctgccattccatcggttatcgacagtcagcaaggcagcatcgtcctgcagggcgagctt
tttttgaagatgaccggtcatcagcaggctgtggacggcggcaggaatgccagagcccgt
gtggcaggggcaatgatgagccaggctgactcgccgctgctggcacaactgggtattttt
atctggagttggcctgacgggccggcgagtatgcctgaacgtctggcccggttgagctca
tggggctttgacctcgccagccactggactcaacccgttcaggatgaagaggatgcggca
agctggcgcgagcgctggtttcacgcgcccttgccttttgttaccgacggtattgttgtg
caccaggctgcccgcccggcaggaaagtactggcagcccggtgagggagagtgggccatc
gcctggaaataccagccaccggaggtgagcagtgaggtacgatccgtagatttctcaata
ggacgaacgggaaaggtggcggtcgtactgaatcttcagcccgttcagcttgatgacaaa
accgtcaggcgtgtcaacatagggtcgttaaaacgctggcgagagcaggatgtcatcgcg
ggagatcaggtgacggttagcctggcaggacagggaattccccggctggagcgcgttatc
tggcgcgtggcgcagcgtgattaccctgagccaccgggttctgagcacttcactcatctg
agttgttatacgttaacgccggattgccatcgccagttactggctcgcctgagctggctg
agtcaaaagttcgtgctgaatattcccggcgttcagcgcagcacctggcagcgactactg
gataccggttgtattacgcacctgttttcctggctgacgattacgccagaacagattacc
gctgcagcaggcatctcctctgaaagagcacagcaaatctggcataggttcgaattgacc
cgccagcaacctttgcgtcgctgggttaacgcattgggcatcgcgttgccccaaaaggca
cttcgcgccctggccgataaagagtgggaacccttgcttgctcgtgatgtgcaaacctgg
caagcgctgcccggcgtgggcgcaaggcgtgctgaacgcattgccgcacaatttcaggat
gccgggctgcggaagttgattacctttttgcagcagcagggcatcccggcatcatcagtg
ttcagggtggggataattgaagatgggcaagccgagtcgaaaccgcagtgccagcaggcg
ggcaaagaaaccgaaaagtaa
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