Pseudomonas lijiangensis: KQP88_02350 Help Entry KQP88_02350       CDS       T08713                                  Symbol ligB Name (GenBank) NAD-dependent DNA ligase LigB   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism plij  Pseudomonas lijiangensis Pathway plij03030   DNA replication plij03410   Base excision repair plij03420   Nucleotide excision repair plij03430   Mismatch repair Brite KEGG Orthology (KO) [BR:plij00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     KQP88_02350 (ligB)    03410 Base excision repair     KQP88_02350 (ligB)    03420 Nucleotide excision repair     KQP88_02350 (ligB)    03430 Mismatch repair     KQP88_02350 (ligB)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:plij03032]     KQP88_02350 (ligB)    03400 DNA repair and recombination proteins [BR:plij03400]     KQP88_02350 (ligB) Enzymes [BR:plij01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      KQP88_02350 (ligB) DNA replication proteins [BR:plij03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      KQP88_02350 (ligB) DNA repair and recombination proteins [BR:plij03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      KQP88_02350 (ligB)    NER (nucleotide excision repair)     GGR (global genome repair) factors      KQP88_02350 (ligB)    MMR (mismatch excision repair)     DNA ligase      KQP88_02350 (ligB)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       KQP88_02350 (ligB) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_5 RNA_ligase Motif Other DBs NCBI-ProteinID:  QWU83665 LinkDB All DBs Position complement(520222..521904) Genome browser AA seq 560 aa AA seqDB search MLNAVRLVGCAALILIASAVSASPCPDWSPARAHNEILSLQQQIAQWDDSYHREGVSLIE DEIYDQSRQRLSVLRSCFASGTSEDNPLKTARGPLPHPVPHTGVTKLADERAVQAWLKGR KDVWIQPKVDGVAVSLVYENGRLSKAISRGDSVNGQDWTHQAQLISAIPKQLPQPDSMVL QGELYWRQTAHVQATAGSINARSKVAGWMARQDLSTTEAQQIGLFVWDWPTGPATLQERI AGLKAIGFDDSAAYTQPLESFEQARDWRDYWYRNALPFATDGIIMRQGERPPAQRWQAKA PYWIAAWKYPYAQVLAEVRKVNFTIGRSGRITPVLELSPVRLDDRTISRLSVGSLQRWQT LDIRPGDQVSLSLAGLTIPRLDKVVSRNSERIVLTVPQQSDFHGLSCWQPTPGCESQFRA RLAWLSGKKGLALPGVGPGTWDRLIEAGQINGLLDWMTLDRAQLAKIPGFAERSSTRLLD SLQVARERPFQTWLVAIGLPPAGRLKPDMEWHELAARSVEQWQSEPGIGPGRAARLWQFF QDPQVQALREQLREQGIAGF NT seq 1683 nt NT seq  +upstreamnt  +downstreamnt atgttgaacgctgtacgtctggtgggctgcgcagccctgattctcatagcctcggcggtt tccgccagcccatgtcccgactggtcgcctgccagagctcacaacgagattctgtctttg cagcagcaaatcgcccaatgggacgacagctatcaccgggaaggcgtctccctgatagaa gatgaaatttatgatcagtcccgccagcgactgagtgtcctgcgctcctgcttcgcctcg ggcacctccgaagacaaccctctgaaaaccgccagagggccacttcctcaccctgttccc cataccggcgtgaccaagctggcagacgagcgggctgtgcaggcctggctgaaaggtcgc aaggacgtgtggatacagcccaaggtcgatggcgtagcggtctcgctggtgtatgagaac ggcaggctgagcaaggccatcagtcgtggcgacagtgtcaacggccaggactggacacat caggcacaactcatatccgccattcccaaacaattgccgcagcctgattccatggttctg caaggagaactgtactggcgccagaccgcgcatgtgcaggccacggctggcagcatcaat gcccgcagcaaggttgccgggtggatggctcggcaagacctgagcaccaccgaggctcaa cagatcggcttgttcgtctgggactggcccaccgggccggcaaccctgcaagaacgaatc gcaggcctgaaagccatagggttcgatgacagcgccgcctacacccagccgctggaaagc tttgagcaggccagagactggcgggattactggtatcgcaatgcactgccctttgccact gacggcatcatcatgcggcagggtgaacgtccacccgcccaacgctggcaagccaaggca ccgtactggatagcagcctggaaatacccctacgcccaggtgctggcagaagtgcgcaag gtcaacttcactatcggacgcagtggcaggatcaccccggtgctggagctgagccctgtg cgactggatgaccggaccatcagcaggctcagcgtcggttcactgcaacgctggcagaca ctggatatccgccccggcgatcaggtttccctgagccttgcaggccttaccattccccgc ctggacaaggtggtttcacgcaatagcgaaagaattgtgctgacggttccacaacaaagc gattttcatggtctgagttgctggcagccgacacctggatgtgaaagtcagttccgggcc agactcgcctggctcagcggcaagaagggtctggcattgcctggggttggaccgggaaca tgggacagactgatcgaagccggccagatcaacggcctgctcgactggatgaccctagat cgtgcgcagcttgctaaaattccgggctttgcagaacgcagcagcaccagactgctcgac agcctgcaggtcgctcgcgaaaggccgtttcagacctggcttgtcgctatcggccttcca ccggcaggcaggttgaagccggatatggaatggcacgagctggctgcaaggagtgtcgaa caatggcagagcgaaccgggtataggcccaggaagggccgcacgactctggcagtttttt caggacccgcaggtgcaggcattgcgcgagcagctacgggagcaaggtatcgcaggtttt taa

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