Candidatus Planktophila limnetica: PHILAsVB114_04125
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Entry
PHILAsVB114_04125 CDS
T05067
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim00300
Lysine biosynthesis
plim00550
Peptidoglycan biosynthesis
plim01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PHILAsVB114_04125
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PHILAsVB114_04125
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
plim01011
]
PHILAsVB114_04125
Enzymes [BR:
plim01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
PHILAsVB114_04125
Peptidoglycan biosynthesis and degradation proteins [BR:
plim01011
]
Precursor biosynthesis
Amino acid ligase
PHILAsVB114_04125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
ASY27826
UniProt:
A0A249LFX6
LinkDB
All DBs
Position
complement(781777..783273)
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AA seq
498 aa
AA seq
DB search
MIRPLIQSQRSLSSVLSIINASTELSASDLEKIAVTGISTSSSDIEPGDIFCAFAGAKVH
GATFAKDAKKSGAVAVLTDAQGAKLIKELPVITVANPRKSAGLLSSWFYGEPMRDLFSIG
ITGTNGKTTVSTLCHQIFQSAGQETGLIGTVETRIGSEVLSSTRTTPEATELQSLVATMR
ERHCRNLVMEVSSHAISLERVRGSYFAAVGFTNLSQDHLDFHGTMDEYFAAKSKLFTFEY
ADHAFINIDDSYGQILAATTELPVQTLSRFNENATWHYTRIENGIQYSDISIRGVGGVLI
DSRTTLRGGFNFDNLLMAVAMCVDSGIDPIDIATLIPHLVGAVGRLESVSLGQNFTALVD
YAHSPDAVARVLAAAREMTDKKVIAVLGCGGDRDSSKRSAMGQELSLRSDVAIFTSDNPR
SENPETILEQMTQGLKISEPSAIVQDRAEAIKLAINLAQPGDVVIVLGKGHERGQEISGV
VHPFDDRLVLAHAIEGKK
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcccattaatacagagtcaacgcagcctctcatcagttctatctatcattaac
gccagcacagagttatcagcaagtgatctagaaaagattgccgtaacaggaatttcaaca
tcgagttcagatattgaaccaggagacatattttgtgctttcgcaggtgcgaaggttcat
ggggcaacttttgcaaaagatgcaaagaagtcaggcgctgtagcagttttgaccgatgcg
caaggtgcgaagttaatcaaagaattgcctgtaattactgtcgctaatccgcgtaagagc
gccggccttctttcttcttggttttatggtgaacccatgcgcgatttatttagcattggg
attacgggaacgaatggcaagacgactgtgagcactttatgccatcaaatctttcaaagt
gcgggacaagaaacaggattaattggaacggttgaaactcgtattggcagtgaagttcta
tctagtactcgcacaactcctgaggcgacagaacttcagtcattagttgcgaccatgcgt
gagcgtcattgccgtaatttggtgatggaagtttcaagccatgcaatctctttagagcgg
gttcgcggaagctattttgcagcagttggatttactaacctctcacaagatcacttagat
tttcacggaactatggatgaatacttcgcagctaagtcaaagttatttacctttgaatat
gcagatcatgcattcatcaacattgatgattcatatggtcaaattttggctgccactaca
gagctgccagtgcagactctctcgcgctttaatgagaacgcaacgtggcactacacacga
attgaaaatggaattcaatatagcgacatctcaattagaggtgttggtggagttttaatc
gatagccgcaccacacttcgtgggggctttaactttgataacttactcatggctgttgca
atgtgtgttgattcaggtattgaccccatagatattgcaacgctgattccacatttagtt
ggcgctgttggtcgcctcgaatctgtgagcttgggtcaaaacttcactgcacttgttgat
tatgcccatagtcctgacgctgttgcgcgagtattagctgctgcgcgcgagatgacggat
aagaaagttatcgctgttcttggttgcggcggagatagagatagctccaagcgcagcgcc
atgggtcaagaactatctcttcgcagcgacgttgcaatctttactagtgataatccacgc
tctgaaaatccagagacaatccttgaacagatgacgcaaggattaaaaatttcagagcca
agtgcaattgttcaagaccgagcagaagcaattaaattagccatcaatttagcccaacca
ggagatgttgtgattgtgctgggtaaaggtcatgagcgtggtcaagaaatttcaggcgta
gttcatccatttgatgatcgattggttttagcacacgcaatcgagggcaagaaatga
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