Candidatus Planktophila limnetica: PHILAsVB114_05180
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Entry
PHILAsVB114_05180 CDS
T05067
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plim
Candidatus Planktophila limnetica
Pathway
plim03030
DNA replication
plim03410
Base excision repair
plim03420
Nucleotide excision repair
plim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHILAsVB114_05180
03410 Base excision repair
PHILAsVB114_05180
03420 Nucleotide excision repair
PHILAsVB114_05180
03430 Mismatch repair
PHILAsVB114_05180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plim03032
]
PHILAsVB114_05180
03400 DNA repair and recombination proteins [BR:
plim03400
]
PHILAsVB114_05180
Enzymes [BR:
plim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PHILAsVB114_05180
DNA replication proteins [BR:
plim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PHILAsVB114_05180
DNA repair and recombination proteins [BR:
plim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PHILAsVB114_05180
NER (nucleotide excision repair)
GGR (global genome repair) factors
PHILAsVB114_05180
MMR (mismatch excision repair)
DNA ligase
PHILAsVB114_05180
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PHILAsVB114_05180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
HHH_3
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ASY28012
UniProt:
A0A249LFY9
LinkDB
All DBs
Position
complement(993510..995534)
Genome browser
AA seq
674 aa
AA seq
DB search
MTSIARHRIDELIKEIRDHQFRYYVLDNPTITDAEFDVLLIELKKLEEANPELRQADSPT
LGIGGGFSTGFEQRDHIEKMMSLDNVFDADELTGWFDRVEKEAKAPTYLCELKVDGLAIN
LKYENGELVSALTRGNGATGEDVTLNVKTIKGLPHTLKGKKVPGLIEVRGEVFFPLAAFA
ELNDGLEEAGKSLFANPRNAAAGSLRQKDPRVTASRPLSIVVHGVGARTGIDFDSQSAAY
ELLAELGLPTSDRFKVCGTRAEVQKYIDYYQEHRHDVEHDIDGVVIKVDSIAEQSALGFT
SRAPKWAIAFKYPPEEVTTKLLDIKVSVGRTGRVTPFAFMEPVKVAGSTVTNATLHNAEE
ITRKGVLIGDVVVIRKAGDVIPEVLGPVIAERTGKERAFVMPIKCPECGSALRAITEGDV
DIRCPNTQSCPAQLRERIYYIGSRAALDIDVLGYEAAVALLESKIITDESDLFDLTKEKL
MTSDFFMKKDGEAGANVDKLLAALDDAKTRPLWRILVALSIRHVGPTAAQALASNFGSMK
VIAKASAEELANIDGLGETIAQSITDWFDVDWHTSIVSKWEKAGVVMVAQAVAQLPQTLA
GLTFVVTGGLESFTRDSIAETIVAHGGKAASAVSKKTDYVLVGSDPGSKLAKAQELGVPV
IDESRFKQILSGNI
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaattgcacgtcacagaattgatgaattaattaaagagattcgtgatcatcaa
tttagatattacgtcctagataatccaacgattacagatgccgaatttgatgttttactc
attgaactcaaaaagctagaagaagccaatccagagctccgccaagctgattcaccaacg
ctaggtatcggtgggggattttcaacaggatttgagcaacgcgatcacatcgaaaagatg
atgagtttggacaatgtttttgacgcagatgaattaaccggttggtttgatcgtgttgaa
aaagaagcgaaagcaccaacgtatttgtgcgagcttaaagtagatggccttgctattaac
ttaaagtatgaaaatggcgaacttgtcagcgcacttactcgcggcaatggcgccacaggt
gaagatgtaacactgaatgtgaaaacaattaaaggtttgccccacacattaaagggcaag
aaagttcctgggctgatcgaagttcgcggagaagttttctttccacttgcagcatttgct
gaattaaacgatgggctagaagaagcaggtaaatcactctttgctaatccacgcaacgca
gccgctggttcgcttcgccaaaaagatccacgtgttacagcctctcgacccttaagcatt
gttgtgcacggagtcggagcacgcacaggaattgattttgattctcagagcgcagcctat
gaattactggcagaacttggtttgcccaccagtgatcgctttaaagtttgtggcacacgc
gcagaggtgcagaagtacatagattattaccaagagcatcgacacgatgttgagcacgat
atcgatggcgttgttatcaaggttgactccattgctgagcagagtgcgctgggctttaca
tcccgcgctcccaagtgggcaattgcatttaagtatccacctgaagaagtaacaacaaaa
ttactagatattaaagtcagcgttggtcgcacaggtcgcgtcacaccctttgcatttatg
gagccagtaaaagttgcgggttctaccgttactaatgcaacgcttcataacgcagaagag
atcacgcgcaaaggtgttttaattggcgacgttgtcgtgattagaaaagccggagatgta
atccctgaagtactcggtccagtcatcgccgagcgcacaggtaaagagcgtgcatttgtt
atgccgataaagtgcccagagtgtggatcagcgcttcgtgccatcacagaaggcgatgtg
gatatccgttgtccaaatacacagagttgtcctgcgcagttgcgcgaacgaatttattac
attggctctcgcgcagcactcgatattgatgtactgggatatgaagcagcggtagcgctg
cttgaatcaaaaattattaccgatgaatctgatctctttgacttaacaaaagagaagtta
atgacatcagatttctttatgaaaaaagatggcgaagcgggtgcaaatgttgacaaactt
ttggccgctctagatgatgcaaaaactcgaccactgtggcgaatacttgtcgcactatct
attcgccacgttggtccaaccgcggctcaagcacttgcatccaactttggttctatgaaa
gtgattgcaaaggccagtgccgaagagttagcaaacattgacggactcggtgaaaccatt
gcgcaatcgattacagattggtttgacgttgattggcacacatcaattgtgagcaagtgg
gaaaaagcaggcgttgtaatggtggcacaagctgttgctcagttgccacaaactttggcg
ggcctgacatttgtggttactggagggctggaatcatttacacgcgattcgattgccgaa
acgattgttgcccacggcggtaaagcagcatcggctgtttcaaagaaaacagattacgta
ttagttggcagtgatcctggttcgaagttagcaaaagcacaggaactaggcgtgcccgta
attgatgagagtcgctttaagcagatccttagcggtaatatttag
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integrated database retrieval system
