Planococcus liqunii: QWY22_05105
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Entry
QWY22_05105 CDS
T10306
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pliq Planococcus liqunii
Pathway
pliq03030
DNA replication
pliq03410
Base excision repair
pliq03420
Nucleotide excision repair
pliq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pliq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QWY22_05105 (ligA)
03410 Base excision repair
QWY22_05105 (ligA)
03420 Nucleotide excision repair
QWY22_05105 (ligA)
03430 Mismatch repair
QWY22_05105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pliq03032
]
QWY22_05105 (ligA)
03400 DNA repair and recombination proteins [BR:
pliq03400
]
QWY22_05105 (ligA)
Enzymes [BR:
pliq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QWY22_05105 (ligA)
DNA replication proteins [BR:
pliq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QWY22_05105 (ligA)
DNA repair and recombination proteins [BR:
pliq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QWY22_05105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QWY22_05105 (ligA)
MMR (mismatch excision repair)
DNA ligase
QWY22_05105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QWY22_05105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
RNA_pol_A_CTD
BRCT_2
RNA_ligase
DUF3201
DUF4796_N
Glyoxalase_2
Motif
Other DBs
NCBI-ProteinID:
WKA51982
LinkDB
All DBs
Position
1031451..1033457
Genome browser
AA seq
668 aa
AA seq
DB search
MDRIQAEQRVTELNEQLRGYGHAYYVLDKPAVPDSVYDQLMNELIELETLYPDLIFPDSP
TQRVGGTPISNFDKVTHALPMLSLSNVFNEEDIRDFDRRVRSGAGDNIEYVCELKIDGLA
VSLIYENGQFVRGATRGDGRVGEDITVNLRTVRTIPLKLRKSESLEVRGEVFMPKKSFHA
LNAERGERGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDAESHGLSEHEETL
QFIEALGFKTNNERQVCRSVEEVLAYIEKWTAQRADLSYEIDGIVIKVNRYLQQQELGFT
AKSPKWATAYKFPAEEVMTTIRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNEDL
IREKDIRIGDKVIIRKAGDIIPEVVSALIEQRTGDELPFEMPENCPACGSELIRIEGEVA
LRCVNPQCPAQITEGLIHFVSRNAMNIEGLGEKVIEQLYREGLIADISDIYKLTKEQLLK
LERMGEKSASNLIAAIDASRSNSMERLLFGLGIRHVGERGARILSEHFGSMEKLMTATFD
ELINIHEIGGKMADSIVAYFETEEVQQLMQRLAEANVNLTYTGTRVQVEEGANAFAGKKI
VLTGKLEKLTRGEAQSQIEALGGKVSGSVSKKTDLVIAGEEAGSKLAKALELKVDVWNEE
RLIEELSK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcatacaagcagagcaacgcgttactgagttaaacgaacaacttcgggggtat
ggccacgcctattacgtgctcgacaaaccggctgttcccgactctgtttacgatcaattg
atgaacgaattaatcgaactcgagactttgtatcccgatttgattttccccgactcaccg
actcaacgggttggcggcacaccgatttccaacttcgataaagtgacgcatgccttgccg
atgctcagtttatcaaacgtttttaatgaagaagacatacgcgattttgaccgccgagtg
cgaagcggcgccggggacaatattgaatatgtctgtgaactgaaaatcgatgggcttgcg
gtctccctgatttatgaaaatggccagtttgtccggggagcgacccggggagacggccgc
gtcggggaagacattaccgtcaacctgcgtacagtgcgcaccatcccgttgaaactgcgg
aagtccgaatccttggaagtgcgcggcgaagtattcatgccgaaaaaatcattccatgca
ttaaatgcagaacgcggggagcgcggcgaggaattgtttgccaatccaagaaacgctgct
gccggatcgctgcgccaattggatccgaaaatcgcagcgagccggaatttggatgtcttt
atctatggcatcggcggagacgctgaatcgcacggattgagcgagcacgaagaaacgctg
cagtttatcgaggcgctcggtttcaaaacgaacaacgaacgccaagtgtgccgaagtgtg
gaagaagtgctggcttatatcgagaaatggacagcgcagcgtgcggatttgtcttatgaa
attgacggcatcgtcatcaaagtgaaccgctacctgcagcagcaggaactcgggtttaca
gcaaaaagcccgaaatgggcaacagcttataaattcccggcagaagaagtgatgaccact
atccgcgacattgaactcagtgtcggacgcacaggtgtcgtaacgccgactgccatactt
gatccggtgtctgtagcagggacaactgttcagcgtgcttcacttcacaatgaagacttg
atccgcgaaaaagacattcgcatcggagataaagttatcatccgaaaagcaggggacatt
attccggaagtagtctctgctctgattgaacagcggacgggagacgaactgccatttgag
atgcccgagaattgtccggcctgcggaagcgaactgatccggattgaaggggaagtggcg
cttcgctgcgtcaatccgcaatgcccggctcagattaccgaaggattgattcattttgta
tcgcgcaatgcgatgaatatcgaagggcttggagaaaaagtgatcgagcagctatatcgg
gaaggcttgattgccgatatttcggatatctacaagctgacgaaagagcaattgctgaaa
cttgaacggatgggagaaaaatctgcatccaatttgattgcggccattgatgcttcgcgc
agcaattcgatggagcgtttattgttcggccttggcatccgccacgtcggcgaacgggga
gctcggattttatccgagcatttcggtagcatggagaaattgatgactgccacttttgat
gaactcatcaatatccatgaaatcggcgggaaaatggccgattcgattgtggcgtatttt
gaaacagaagaagttcaacaattgatgcaacgtttagctgaagcaaacgtcaatttaact
tatacagggacacgcgttcaagttgaagaaggcgcaaatgcctttgccggcaagaaaatc
gttttgaccggaaaacttgaaaaactgacgcgcggcgaagcacagtcacagattgaagcg
ctgggcggaaaagtatccggcagtgtcagcaagaaaacggatctggtcatcgcaggcgaa
gaagctggttcaaaactggcgaaagcgttggaactgaaagtggacgtttggaacgaagaa
cgtctcattgaagaattgagtaaatga
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integrated database retrieval system
