Pseudomonas serboccidentalis: NN484_10810
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Entry
NN484_10810 CDS
T10180
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plis Pseudomonas serboccidentalis
Pathway
plis03030
DNA replication
plis03410
Base excision repair
plis03420
Nucleotide excision repair
plis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NN484_10810 (ligA)
03410 Base excision repair
NN484_10810 (ligA)
03420 Nucleotide excision repair
NN484_10810 (ligA)
03430 Mismatch repair
NN484_10810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plis03032
]
NN484_10810 (ligA)
03400 DNA repair and recombination proteins [BR:
plis03400
]
NN484_10810 (ligA)
Enzymes [BR:
plis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NN484_10810 (ligA)
DNA replication proteins [BR:
plis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NN484_10810 (ligA)
DNA repair and recombination proteins [BR:
plis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NN484_10810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NN484_10810 (ligA)
MMR (mismatch excision repair)
DNA ligase
NN484_10810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NN484_10810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WDR38198
LinkDB
All DBs
Position
2343338..2345695
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSVALTAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAALEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DISDTHIGNLKQLQAWGLPISHELKLAKGIGECLDYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPDDARPVHIPQSCPVCGS
HVERTQLVKRSKGKETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAEVSSNKLLAAIEDSKQPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDIGLEVAHEIHSFFEDAHNQQVITELLGHGL
QIQDQGELGAEFAASTTLGGLLDKLHIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANSVREFFASPEHRQIAESAEKQLRDFGMHWLSEKKVVEGLPLSGQTWVLTGKVEL
MSRDVAKEHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKT
HGISA
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagaactgcgcgctgagctcgatcagcacaactac
cgttaccacgtcctcgacgaaccgagcattccggacgccgaatacgaccggttgttccac
gagctcaaggcgctggaagcggccaacccggaactgatcaccagcgactcgccaacccag
cgcgtcggcagcgtggccctgaccgcgttcacccaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgagttcgaccgccgggtgactgaa
gggctggacctgccggccggcgatctgttcggtggcggtgcggcggtggagtacagctgc
gaaccgaagctcgatggcctggcggtcagcctgctgtatcaggacggcgtgctggtacgc
ggcgccacacgcggcgacggcaccaccggtgaagacatcagcgtcaacgtgcgcaccgtg
cgcaacatcccgctgaagctgcacggcagcggttggccggcggccctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgcctcaacgcctcgcaactggaagtcggc
ggcaagaccttcgccaacccgcgcaacgccgctgccggcagcctgcgtcagctggattcg
aagatcaccgccaaccgcccgctggaattttgctgctacggcattggtcaggtctcccac
gatatttctgacacccacatcggcaacctcaagcaattgcaggcgtggggcctgccgatc
agccatgagctgaaactggccaaaggcatcggcgagtgcctggattactaccgcgacatc
ggcgagcgacgtaactcgctggcctacgaaattgacggcgtggtgttcaaggtcaacagc
attgccgatcagcgtgagttgggctttcgtgcccgcgaaccgcgctgggccatcgcgcac
aaattcccggcgatggaagaactcaccgagctgctcgacgtggaattccaggtcggccgc
accggtgccgttacgccggtagcgcgactgaaaccggtcaaggttgccggtgtcactgtc
gccaacgccactttgcacaacatggatgaagtggcgcgtctgggcttgatgatcggcgac
acggtgatcatccgccgcgccggtgacgtgatcccgcaggtggtgcaagtggtcaccgaa
cgtcgccccgacgatgcgcgcccggtgcatatcccgcaaagctgcccggtgtgcggctcc
cacgtcgagcgcacgcaactggtcaagcgcagcaaaggcaaggaaaccatcagcgaaggc
gcggtgtaccgctgcgtcggccgtctggcctgtggcgcacaactgaaacaggcgatcatt
cactttgtgtcgcgccgggcgatggacatcgaaggcctcggcgacaagagcgtcgagcaa
ctggtcgacgaaggtctggtcagttcgccggcggacctgtacgcgctgaagtttgacgac
atcgtcgatctggagggcttcgctgaagtctccagcaacaagctgctggcggcgatcgaa
gacagcaagcagccaggactggcgcgcttcatctacgccctaggcattcccgatgtcggc
gaggagacggccaaggtcctggcgcgttcgctgggttcgctggagcgcgtgcaacaggcg
ctgccacaagtgctgacctacctgccggacatcggcctggaagtggcgcacgagattcac
agcttcttcgaagatgcgcacaaccagcaggtgattactgaattgctggggcatggtctg
cagattcaggatcagggcgagctgggcgccgagtttgctgcgagtaccacgctcggtggg
ttactcgacaagctgcacatcccttcggtcggcccgggcggcgcgcagaaactcgcagac
aagttcggctcgctggaagcggtgatgaatgccgattggctggacatgcgtcaggcactg
ccggagaaacaggccaattcggtgcgcgagttctttgcttcgccagagcaccggcagatc
gccgagtccgccgagaaacagctgcgtgatttcggcatgcactggttgagcgagaagaaa
gtcgtcgaaggcctgccgctgtccggccagacctgggtgctgaccggcaaggttgagctg
atgagtcgtgatgtggccaaagagcatctggaaagcctcggcgccaaggtggcgggctcg
gtatcggcgaaaactcattgcgtggtcgcagggccgggcgccggctcgaaactgaccaag
gccaatgagctgggcgtgaaggtcatggacgaagaagcgtttatcgccttcctcaaaacc
catggtatttctgcctga
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