Planococcus versutus: I858_003370
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Entry
I858_003370 CDS
T04421
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pll
Planococcus versutus
Pathway
pll03030
DNA replication
pll03410
Base excision repair
pll03420
Nucleotide excision repair
pll03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I858_003370 (ligA)
03410 Base excision repair
I858_003370 (ligA)
03420 Nucleotide excision repair
I858_003370 (ligA)
03430 Mismatch repair
I858_003370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pll03032
]
I858_003370 (ligA)
03400 DNA repair and recombination proteins [BR:
pll03400
]
I858_003370 (ligA)
Enzymes [BR:
pll01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I858_003370 (ligA)
DNA replication proteins [BR:
pll03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I858_003370 (ligA)
DNA repair and recombination proteins [BR:
pll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I858_003370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I858_003370 (ligA)
MMR (mismatch excision repair)
DNA ligase
I858_003370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I858_003370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ANU26075
UniProt:
A0A1B1RYQ4
LinkDB
All DBs
Position
898337..900343
Genome browser
AA seq
668 aa
AA seq
DB search
MDRLKAEERVNELNEILRNYGHAYYVLDKPTVPDAVYDQLLNELIELEVLFPDLVFPDSP
TQRVGGTPISNVEKVTHDRPMLSLSNVFGEEDLREFDKRVRSGAGDKVEYVCELKIDGLA
VSLLYEDGKFIKGATRGDGRIGEDITANLRTIRAIPLKLKGAVTLEVRGEVFMPKKSFDT
LNEQRGEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYNLSDHDESL
DYLAKQGFKTNTERQVCTTVEEVVAYIEKWTEKRTQLPYEIDGIVIKVNQFLYQQELGFT
AKSPKWATAYKFPAEEVLTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNEDL
IKEKDIRIGDKVIIRKAGDIIPEVVSVVVDQRSGEELPFNMPTECPACDSELVRIEGEVA
LRCVNPQCPAQIIEGLIHFASRNAMNIDGLGEKVVEQLYRERLIQDISDIYKLEKEQLLE
LERMGDKSASNLVAAIDASRSNSMEKLLFGLGIRHVGERGARILSEHFGTLERMLNASKE
ELVAIHEIGDKMADSIVTYFDNEEVRALVERLRKADVNLTYTGARVRIEEGANAFAGKKI
VLTGKLEQMTRQEASAQIEALGGKLSGSVSKKTDLLIAGEEAGSKLDKARELKVEIWDEN
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcttgaaagcagaagaacgtgtaaatgaattaaatgaaatacttcgaaactat
ggtcacgcatactacgtgctagataagccgactgtgccagatgctgtatatgatcaactg
ttaaatgaattgattgagttggaagtgcttttcccagatttagtatttccagattcacca
acacaacgtgtcggaggaacaccaatttcgaatgtggaaaaagttactcatgatcgcccc
atgctcagcttgtcaaacgtatttggagaagaagatttacgtgaatttgataagcgtgta
cgaagtggagcaggggataaagtcgaatacgtttgtgagttgaaaattgatggtcttgca
gtgtcgcttttatacgaagatggcaaatttattaaaggcgcgacacgtggagacggccgc
atcggagaagacatcacagcaaacttacgaaccattcgcgcaatcccattaaaactaaaa
ggtgctgtgacgcttgaagtgcgcggcgaagtttttatgccgaaaaaatcgttcgatacg
ttaaatgaacaacgaggtgaacaaggtgaagaattgtttgcgaatccacgcaatgcggca
gcaggatcgctacggcaattagatccgaaaattgcggcgagtcgtaatttagacgtcttt
atatatggaattggtggagacggggaaacgtataatttatcagaccatgatgagtcgctc
gattacctcgcaaagcaaggtttcaagacaaatacagaacgccaagtttgtacgactgtc
gaagaagtagtagcttatatcgaaaaatggacagaaaaacgaactcagctgccatatgaa
atcgatggcatcgtaattaaagtcaatcagtttttatatcaacaagaacttggatttaca
gctaaaagcccgaaatgggcaacagcttataaatttcctgcagaagaagtgttgactacc
gtacgcgacatcgaattgagcgtgggccgaacgggtgttgtgacgcccacagctatacta
gatccagtttcagttgcaggtaccactgtgcagcgagcttctttacacaatgaagacttg
ataaaggaaaaagatattcgtattggtgacaaagtgattattagaaaagcgggagacatt
atccccgaagtagtatcagttgttgttgatcaacgttctggagaagagctaccttttaat
atgccgaccgaatgtcctgcatgtgacagcgaacttgttcgcatcgaaggggaagtcgct
ctacgttgtgtaaatccgcaatgtcctgctcaaattatagaaggattgattcattttgcg
tcacgcaatgccatgaatattgatggtctgggtgaaaaagtggttgagcaattgtatcga
gaaaggttgattcaagacatttcagatatatataagctcgaaaaagagcaattattggag
ttagaacgaatgggcgataaatcagcttcgaatttagtagccgctattgatgcttctaga
agcaattcaatggaaaagttattgtttggtctaggaattcgtcatgtaggtgaaagaggt
gcacgcattttgtccgagcattttggaacgcttgagcgaatgctaaatgcatcgaaagaa
gagttagtagcaatacatgaaattggcgacaaaatggcggactctatcgttacgtatttt
gataacgaagaagttcgtgcattagtggaacgtttgcgtaaagcggacgtcaatttaacg
tacacaggtgcacgcgtccggattgaagaaggcgcaaatgcatttgcaggtaagaaaatt
gttttgactggtaagcttgaacaaatgacacgccaagaagccagtgctcaaattgaagca
ctggggggtaaactgtcaggtagtgttagcaagaaaacggatttattaatcgctggcgaa
gaagcaggctcaaagctcgataaagcgcgtgagctaaaagtggaaatttgggatgagaat
cgtctcgttgaggaattgaacaaataa
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