Polystyrenella longa: Pla110_38690
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Entry
Pla110_38690 CDS
T06945
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
plon
Polystyrenella longa
Pathway
plon03030
DNA replication
plon03410
Base excision repair
plon03420
Nucleotide excision repair
plon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
plon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pla110_38690 (ligA)
03410 Base excision repair
Pla110_38690 (ligA)
03420 Nucleotide excision repair
Pla110_38690 (ligA)
03430 Mismatch repair
Pla110_38690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
plon03032
]
Pla110_38690 (ligA)
03400 DNA repair and recombination proteins [BR:
plon03400
]
Pla110_38690 (ligA)
Enzymes [BR:
plon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Pla110_38690 (ligA)
DNA replication proteins [BR:
plon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pla110_38690 (ligA)
DNA repair and recombination proteins [BR:
plon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Pla110_38690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pla110_38690 (ligA)
MMR (mismatch excision repair)
DNA ligase
Pla110_38690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Pla110_38690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
ACT_5
BRCT_2
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
QDU82114
UniProt:
A0A518CSE6
LinkDB
All DBs
Position
5043183..5045207
Genome browser
AA seq
674 aa
AA seq
DB search
MSKAIQQEIESLRAELLRHNKLYYVDVAPEVTDREFDQLMKQLEKLEADHPEYDSPDSPT
HQVGGEPISGFKTITHRVPMLSIENAFSTEELTTFDQRVRKLLDSEQFEYTLEYKIDGVA
LSLIYEAGVLTQAVTRGNGVEGDDVTHNARVMRGVPLKLMGKKLPAVLEIRGEAYIRNSD
FSEIRAEQEAAGGQVFANPRNATSGALKRLDPSLSAKMKLHFFAHGIGYTEGADFETQHD
FIKQVQQMGIPATPEMVRCTDIDDVQRSLNSLIEKLPLLDFEVDGIVVKVDRFDLREQLG
TRSKSPRWVIAYKWEKYEATTQVKEIDINVGKTGALTPVAYLEPVEIAGTTVSRASLHNR
DEIERLEIGIGDWVVVEKAGKIIPHVVRVEKHRRTGEEQPFKFPERCPACGGEVQQDEGG
VYVRCINLNCPAQLRETLRFYASRSAMDIEGMGIKLVEQLIEAGLLTKLTDIYRLSTKEE
EMLALDRLGQKSVDNLLEGIEKSKQQPLRRLLTGLNIRHVGTNGSRVLSEAFGTMNKIRE
QSIEELAAVEEIGPITAESVYQFFQSEVGRETVEELKEFGLNMGTPVAERPKSEEEAGIL
AGKMLVVTGSLEKFTRDEIHELIREQGGKPSSSVSSKTSFLVAGEKAGSKLDKADKLGIE
VLSENDFLAMIGKQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagcgatacagcaggaaatcgaatctctccgcgcggagttactccgccacaat
aaattatattacgtcgatgtggcccccgaagtgacggaccgggaattcgaccagttgatg
aaacaactggagaagctggaagcggatcaccccgaatacgattcgcccgatagtcctacg
catcaggtcggtggagaaccaatctccggattcaaaacgatcacccatcgcgttccgatg
ttgtcgatcgaaaacgctttcagcacggaagaactgacgacgtttgatcaacgcgttcgc
aagttgttggactcagagcaatttgagtatacgctggaatacaaaatcgatggagtcgct
ctgtccctcatctatgaggcaggcgtactgactcaggcggtgactcgcggaaatggagtc
gaaggagacgatgtcactcataacgctcgggtgatgcgaggcgtgccgctcaaattgatg
ggaaagaagcttccagctgtgctggagatacgcggggaagcttatattcgaaattctgac
ttctccgaaatacgggcggagcaggaagcggcaggcggacaagtgtttgccaatccacga
aacgctaccagcggggcgctgaaacggctcgatcccagtttatcggccaaaatgaaactt
cactttttcgcgcatgggatagggtataccgaaggtgctgattttgaaacgcagcatgac
tttatcaaacaggtccaacagatgggaattccggcgacacccgagatggtgcggtgtacc
gatatcgacgatgtgcagcgttcattgaacagcttgattgaaaagttacccctgctcgat
ttcgaagtcgatggaattgtcgtcaaagtcgaccgatttgatctacgcgaacaattggga
acacggtccaaaagcccccgttgggtcatcgcctataaatgggaaaagtacgaagcgacg
acgcaggtgaaagagatcgacatcaatgtcggcaagacgggcgcactgacccccgtagcc
tatctggaaccggtagagattgctggcacaaccgtttcccgcgccagcctgcacaacaga
gatgaaattgaacggttggaaattggcattggcgactgggttgtcgttgagaaggcgggg
aagattatccctcatgttgtccgtgtcgaaaaacatcggcggacgggagaagaacaacct
tttaagttccccgaacgatgtcctgcctgtggcggcgaagtccaacaggatgaaggaggc
gtctatgttcgctgcatcaatttgaactgtcccgcccaattgcgcgagaccttacggttt
tatgcttcccgcagtgcaatggacattgaaggtatgggcatcaaactggtggagcaactg
atcgaagctggattgctgacgaagctgaccgacatttatcggctttcgacaaaagaagaa
gaaatgttggccttggatcggctgggacagaagtcagtggataacttgttggagggaatt
gaaaagtcgaaacagcaacctttgagaagattactgacggggctcaacattcgacatgtc
ggtacgaatggaagtcgagttttgagcgaagcttttggcacgatgaacaaaatcagagaa
cagagtatcgaagaactggcggcggtagaagaaattggccccatcactgcggaatcggtc
taccagtttttccagtcggaagtgggacgggagactgtcgaggaacttaaggaattcggg
ctgaatatggggacgccggtcgccgaacgacccaagtcggaagaggaagcaggaattctg
gcgggaaaaatgctcgtggtgactggctcgctggaaaaattcactcgagatgaaatacac
gaactgattcgtgaacaggggggaaaaccctcatcgagcgtctcttctaaaaccagcttt
cttgtggcgggtgagaaagcgggcagtaaattagacaaagcagacaaactgggaatcgaa
gtactctctgagaatgattttctggcgatgatcggcaaacagtag
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integrated database retrieval system
