Perognathus longimembris pacificus (Pacific pocket mouse): 125340576
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Entry
125340576 CDS
T08928
Symbol
Thbs1
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04015
Rap1 signaling pathway
plop04115
p53 signaling pathway
plop04145
Phagosome
plop04148
Efferocytosis
plop04151
PI3K-Akt signaling pathway
plop04350
TGF-beta signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04820
Cytoskeleton in muscle cells
plop05144
Malaria
plop05165
Human papillomavirus infection
plop05205
Proteoglycans in cancer
plop05206
MicroRNAs in cancer
plop05219
Bladder cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
125340576 (Thbs1)
04350 TGF-beta signaling pathway
125340576 (Thbs1)
04151 PI3K-Akt signaling pathway
125340576 (Thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125340576 (Thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125340576 (Thbs1)
04148 Efferocytosis
125340576 (Thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
125340576 (Thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125340576 (Thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125340576 (Thbs1)
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
125340576 (Thbs1)
05205 Proteoglycans in cancer
125340576 (Thbs1)
09162 Cancer: specific types
05219 Bladder cancer
125340576 (Thbs1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
125340576 (Thbs1)
09174 Infectious disease: parasitic
05144 Malaria
125340576 (Thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125340576 (Thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125340576 (Thbs1)
Membrane trafficking [BR:
plop04131
]
Endocytosis
Phagocytosis
Opsonins
125340576 (Thbs1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125340576 (Thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
Laminin_G_3
TSP1_ADAMTS
TSP1_CCN
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
125340576
NCBI-ProteinID:
XP_048188233
LinkDB
All DBs
Position
23:complement(33137260..33152325)
Genome browser
AA seq
1171 aa
AA seq
DB search
MGPAWGLCLLLLAHVRASNRIPEPGADGSVFDVLELAGAARRGSGRRLVKGPDPSSPAFR
IENADLIPPMPDDKFQDLVDAVRAEKGFLLLASLRQMKKTRGALLAVERKDLAGPVFSVV
SNGRAGTLDLGLHAQGKRQVVSVDEALLATGQWKTITLFVQEDRAQLYVDCEKMESVELD
VPIQSIFTRDLARVARLRVAKGHDNDNFQGVLQNVRFVFGTTPEDVLRNKGCSSSAANVR
LTLDNNMVNGSSPAIRTNYIGHKTKDPQAVCGISCEELSGMALELRGLRTIVATLQDSIR
KVTEENKELANELRRPHFCYHNGVQYRNNEEWTVDGCTECHCQNSVTICKKVSCPIMPCS
NATVPDGECCPRCWPSDSAEDGWSPWSEWTSCSATCGNGIQQRGRSCDSLNNRCEGSSVQ
TRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPSPQMNGKPCEGDAR
ETTVCRKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPTPQFGGKDCIGDETENQ
VCSKQDCPIDGCLSNPCFAGARCTSYPDGSWKCGACPAGYRGNGVQCRDVDECQEVPDAC
FSHNGEHRCENTDPGYNCLPCPPRFTGSQPFGRGVEHAMANKQVCSPRNPCKDGTHDCNR
NANCNYLGHYSEPMYRCECKPGYAGNGVICGEDTDLDGWPNEDLVCVANATYHCKKDNCP
NLPNSGQEDYDKDGLGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPY
NHNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLE
HNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDD
NDGIPDDRDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRR
FQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERD
DDYAGFVFGYQSSSRFYVVMWKQVTQSYWDTNPTRAQGYSGLSVKVVNSTTGPGEHLRNA
LWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIY
DKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggggccggcctggggactctgcctcctgctcctggcgcacgtgcgcgcctccaaccgc
atccccgagcccggcgcggacggcagcgtgttcgacgtgctggagctggcgggggccgcg
cgccggggctccgggcggcggctggtgaagggccccgacccgtccagcccggctttccgc
atcgagaacgccgacctgatccccccgatgcccgacgacaagttccaagacctggtggac
gccgtgcgggccgagaagggcttcctgctgctggcctcgctgcggcagatgaagaagacg
cgcggcgcgctgctggccgtggagcgcaaggacctggcggggcccgtgttctccgtggtc
tccaacggcagggcgggcaccctggacctcggcctgcacgcgcagggcaagcggcaggtg
gtgtcggtggacgaggccttgctggccaccggccagtggaagaccatcaccctgttcgtg
caggaagacagggcccagctctacgtcgactgcgagaagatggagagcgtggagctggac
gtccccatccagagcatcttcacccgggacctggcccgcgtcgccaggctccgagtcgcc
aagggacacgacaacgacaatttccagggggtgctgcagaatgtgaggtttgtcttcgga
accaccccggaagatgtcctcaggaacaaaggctgctctagctcagctgccaatgtccgg
ctcaccctggacaacaacatggtgaacgggtccagccccgccatccgcaccaactacatc
ggccacaagacgaaggacccgcaagccgtctgcggcatctcgtgcgaggagctgtcgggc
atggccctggagctgcggggcctgcgcaccatcgtggccaccctacaggacagcatccgc
aaagtgacggaagagaacaaagagctggccaacgagctgaggcggccccacttctgctac
cacaatggagtccagtacaggaacaacgaggagtggacggtggacggctgtactgagtgc
cactgccagaattcggttaccatctgcaagaaagtgtcctgccccatcatgccttgctcc
aacgccacagttcctgacggggagtgctgcccgcggtgttggcccagcgactccgcggag
gacggctggtccccgtggtccgagtggacgtcctgctcggcgacgtgcggcaacggcatc
cagcagcgcggccgctcctgcgacagcctcaacaaccgctgcgagggctcctccgtgcag
acgcgaacctgccacctccaggagtgcgacaagcgattcaagcaggatggcggctggagc
cactggtccccctggtcctcttgttctgtgacctgcggcgatggcgtcatcacgaggatc
cgtctctgcaactcccccagcccccagatgaacgggaagccgtgcgagggtgacgctcgg
gagaccacagtgtgcaggaaagacgcctgtcccatcaatggaggctggggtccctggtca
ccatgggacatctgctctgttacctgtggaggcggggtccagaaacgtagccggctttgc
aacaaccccacaccccagttcggaggcaaagactgcattggcgatgagactgaaaaccaa
gtgtgcagcaagcaggactgtccaatcgacggctgtctgtccaacccttgctttgccggt
gcccggtgcaccagctatcccgacggcagctggaagtgcggcgcctgcccggcgggctac
cgtgggaatggcgtccagtgccgcgacgtggacgagtgtcaagaagtgcccgacgcctgc
ttcagccacaacggggagcaccggtgcgagaacacggaccccggctacaactgcctgccc
tgcccgccgcgcttcaccggctctcagccgttcggcaggggcgtggagcacgccatggcc
aacaaacaggtgtgcagtccccgcaacccctgcaaggacgggacacacgactgcaaccgg
aacgccaactgcaactacctgggccactacagcgagcccatgtaccgctgcgagtgcaag
ccgggctacgccggcaacggcgtcatctgcggcgaggacaccgacctcgacggctggccc
aacgaggacctggtgtgcgtggccaacgccacctaccactgcaaaaaggacaattgcccc
aaccttcccaactcggggcaggaggactacgacaaggatgggctgggcgacgcctgtgat
gatgacgatgacaacgataagattccggatgacagggacaactgtccattccactacaac
cctgcccagtacgactacgaccgagacgacgtgggagatcgctgcgacaactgcccctac
aaccacaaccccgaccaggcggacaccgacaacaacggggagggagacgcgtgcgcggcc
gacatcgacggggatggtatcctcaatgaacgagacaactgccagtacgtgtacaatgtg
gaccagagggacacggacatggacggggttggggaccagtgtgacaactgccccctggag
cacaacccagaccagctggactctgactcggaccgcattggggacacgtgtgacaacaat
caggacattgatgaagacggacaccagaacaacctagacaactgtccttacgtgcccaac
gccaaccaggccgaccacgacaaggacggcaagggagatgcttgcgaccatgacgacgac
aatgacggcattcccgatgacagggacaactgcaggctggtgcccaatcccgaccagaag
gactctgacggtgatggtcgaggcgatgcatgcaaagatgactttgaccatgacagcgtg
ccagacatcgatgacatctgtcctgagaatgttgacatcagtgagaccgacttccgccgg
ttccagatgattcctctggatccgaaagggacgtcccagaacgaccctaactgggtggtg
cgccatcagggcaaagagctggtccagacggtcaactgtgatccgggccttgctgtgggt
tacgatgagttcaacgctgtggacttcagtggcaccttcttcatcaacaccgagagggac
gatgactacgccgggtttgtgtttggctaccagtccagcagccgcttctacgtggtgatg
tggaagcaagtcacccagtcctactgggacaccaaccccaccagggctcagggatactcc
ggcctgtccgtcaaagtcgtcaactccaccacgggccctggggagcacctgcggaacgcc
ctgtggcacacaggaaacacccctggccaggtgcgcaccctgtggcatgaccctcgtcac
ataggctggaaagatttcaccgcctacagatggcgtctcagccaccggccaaagacaggc
ttcattagagtggtaatgtacgaggggaagaagatcatggctgattctggccccatctat
gacaaaacctatgctggcggcaggctaggactgtttgtcttctctcaagaaatggtgttc
ttctccgatctgaaatacgaatgtagagattcctaa
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