Perognathus longimembris pacificus (Pacific pocket mouse): 125341440
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Entry
125341440 CDS
T08928
Symbol
Trpc3
Name
(RefSeq) short transient receptor potential channel 3 isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04360
Axon guidance
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
125341440 (Trpc3)
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
125341440 (Trpc3)
05022 Pathways of neurodegeneration - multiple diseases
125341440 (Trpc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125341440 (Trpc3)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125341440 (Trpc3)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
125341440
NCBI-ProteinID:
XP_048189444
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Position
24:complement(1554841..1622527)
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AA seq
917 aa
AA seq
DB search
MSAKVRRGGETARVTFPVAAEEGEERGAEPQSRRRAWRGVNGGPETHPATPAAPPRSPGP
DLCMEGSPSPRRAAAAAAAAAMREKGRRQAVRGPAFLFGARGPSLTAEEERFLDAAEYGN
IPVVRKMLEESRTLNVNCVDYMGQNALQLAVGNEHLEVTELLLRRENLARIGDALLLAIS
KGYVRIVEALLGHPGFAARGRLALSPGEPPPRGDDFYAYDEDGTRFSPDVTPLILAAHGH
KYEVVHLLLLKGARIERPHDYFCKCAACAARQRLDAFSHSRARINAYRGLASPAYLALAS
EDPVLAALELSNELAKLANIEKEFKNDYRKLSMQCKDFVVGVLDLCRDSEEVEAILNGDL
EASEPQEVHRHKASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTIAIKCL
VVLVVALGLPFLAMGYWIAPCSRLGKVLRAPFMKFVAHAASFIIFLGLLVFNASDRFDGI
TTPPNVTAIDFPRQIFRVKTTQFTWTEMLIMVWVLGMMWSECKELWLEGPREYILQLWNV
LDFGMLSIFIAAFTARFLAFLQATKAQQYVDSYIQESDLSEVTLPPEIQYFTYARDKWLP
SDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAF
MIGMFILYSYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVTSVVLKYDHKFIENIGYVLY
GIYNVTMVVVLLNMLIAMINSSYQEIEDDSDVEWKFARSKLWLSYFDDGKTLPPPFSLVP
SPKSFVYFIMRILNLSKCRRRRLQKDLEMGMGNSKSRLNLFTQSNSRVFESHSFNSILNQ
PTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLEDKSQATEELAI
LIHKLSEKLNPSVLRCE
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccaaggtcaggcggggcggggagacggcgcgggtgaccttccccgtggccgcc
gaggagggcgaggagcgcggggccgagccgcagagccgccgccgcgcctggaggggcgtc
aacggggggccggagacgcaccccgcaacgccggcagcgccgccccgcagccccgggccc
gacctgtgcatggagggcagcccgtccccgaggcgcgcggcggcggcggcggcggcggca
gcgatgcgggagaaggggcggcggcaggcggtgcggggccccgcgttcctgttcggcgcc
cgcggccccagcctgacggccgaggaggagcgcttcctggacgcggccgagtacggcaac
atcccggtggtgcggaagatgctggaggagtcgcgcacactgaacgtgaactgcgtggac
tacatggggcagaacgcgctgcagctggcggtgggcaacgagcacctggaggtgacggag
ctgctgctgcgccgcgagaacctggcgcgcatcggcgacgcgctgctgctcgccatcagc
aagggctacgtgcgcatcgtcgaggcgctgctgggccacccgggcttcgcggcgcgcggg
cgcctggcgctcagccccggggagccgccgccgcgcggcgacgacttctacgcctacgac
gaggacggcacgcgcttctcgcccgacgtcacgccgctcatcctggcggcgcacggccac
aagtacgaggtggtgcacctgctgctgctcaagggcgcgcgcatcgagcgcccgcacgac
tacttctgcaagtgcgccgcctgcgccgcgcgccagcgcctcgacgccttcagccactcg
cgcgcgcgcatcaacgcctaccgagggctggccagccccgcctacctcgccctggccagc
gaggaccccgtgcttgccgccctcgagctcagcaacgagctcgccaagctggccaacatc
gagaaggagttcaagaatgactataggaagctgtccatgcagtgtaaagacttcgtggtc
ggtgtgctggacctctgccgggactcggaggaagtagaagccattctcaacggcgatctg
gaggccagcgagccccaggaggtacacagacacaaggcttccctgagccgtgtcaaactt
gccatcaaatacgaagtcaagaagttcgtcgctcaccccaactgccagcagcagctcctg
accatctggtacgagaacctctcgggcctccgcgagcagaccatagccatcaagtgtctg
gtggtgctggtggtggcgctgggcctgcccttcctcgccatgggctactggatagcgccg
tgcagcaggctggggaaggtcctgcgggcccctttcatgaagttcgtggcccacgcggcc
tccttcatcatcttcctgggcctcctggtgttcaatgcctcggacaggtttgatggcatc
accaccccgcccaatgtcactgccatcgatttccccagacagatcttcagggtgaagact
acccagttcacgtggacggaaatgctcattatggtctgggttctgggaatgatgtggtct
gagtgcaaggagctgtggctagaaggcccgagggaatacatcctgcagctctggaacgtt
ctagactttgggatgctgtccatcttcattgctgcgttcactgccagattcctggctttc
cttcaggccacaaaagcccagcagtatgtggacagttacatccaggagagcgacctcagc
gaggtcacgctgccacccgaaattcagtatttcacttatgccagagataaatggctcccc
tctgacccccagatcatatcggaaggtctgtatgccatcgccgtggtcctcagcttctct
cggatcgcctacatccttcctgccaatgagagcttcggccctctgcagatctccctggga
agaactgtcaaagacatcttcaagttcatggttctctttattatggtgttcctggccttt
atgatcggcatgttcatactatattcttactaccttggggccaaagttaatcctgctttt
accactgtggaagaaagtttcaagactttattttggtccatttttgggttgtcggaagtg
acttctgtagtacttaaatatgatcacaaatttatagagaatattggatatgttctttat
ggaatatacaatgtaactatggtggtggttttgctcaacatgctcattgctatgattaat
agctcctatcaggagattgaggatgacagcgacgtagaatggaaatttgcccgctcaaag
ctctggttatcctattttgacgatgggaaaaccttacctccacccttcagtctggtccct
agtcccaagtcttttgtgtatttcatcatgcggatcttgaacctttccaaatgcagaagg
agaaggctacagaaggatctggaaatgggaatgggtaactcaaagtcaaggttaaacctc
ttcactcagtctaactcaagagtttttgaatcacacagtttcaacagcattctcaaccaa
ccaacaagataccagcagataatgaaaagacttatcaagcgctatgttctgaaagcacaa
gttgacaaagaaaatgacgaagtcaatgaaggtgaattaaaggaaatcaagcaagatatc
tccagccttcgatatgaacttttggaagacaagagccaggccactgaggaattagccatt
ctaattcataaactcagcgagaaactgaatccgagtgtgctcaggtgtgaatga
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