Perognathus longimembris pacificus (Pacific pocket mouse): 125341940
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Entry
125341940 CDS
T08928
Symbol
Sqstm1
Name
(RefSeq) sequestosome-1
KO
K14381
sequestosome 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04137
Mitophagy - animal
plop04140
Autophagy - animal
plop04217
Necroptosis
plop04218
Cellular senescence
plop04380
Osteoclast differentiation
plop05014
Amyotrophic lateral sclerosis
plop05022
Pathways of neurodegeneration - multiple diseases
plop05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125341940 (Sqstm1)
04137 Mitophagy - animal
125341940 (Sqstm1)
09143 Cell growth and death
04217 Necroptosis
125341940 (Sqstm1)
04218 Cellular senescence
125341940 (Sqstm1)
09150 Organismal Systems
09158 Development and regeneration
04380 Osteoclast differentiation
125341940 (Sqstm1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125341940 (Sqstm1)
05022 Pathways of neurodegeneration - multiple diseases
125341940 (Sqstm1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
125341940 (Sqstm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125341940 (Sqstm1)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125341940 (Sqstm1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125341940 (Sqstm1)
Membrane trafficking [BR:
plop04131
]
Autophagy
Mitophagy
Cargo receptors
125341940 (Sqstm1)
Pexophagy
125341940 (Sqstm1)
Aggrephagy
125341940 (Sqstm1)
Xenophagy
125341940 (Sqstm1)
ER-phagy
ER-phagy recepters
125341940 (Sqstm1)
Other autophagy associated proteins
Midbophagy
125341940 (Sqstm1)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
125341940 (Sqstm1)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125341940 (Sqstm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_5
ZZ
PB1
Motif
Other DBs
NCBI-GeneID:
125341940
NCBI-ProteinID:
XP_048190026
LinkDB
All DBs
Position
25:16446091..16460379
Genome browser
AA seq
442 aa
AA seq
DB search
MASVTVKAYLLGKEEATREIRRFNFSLGDSSEPEAEAEAAVRPGPCERLLRRLAVLFPAL
RSGGFQAHYRDEDGDLVAFSSDEELTMAMCYVKDDIFRIYIKEKKECRRDHRPPCVQEAP
RSAVHPNVICDGCNGPVLGTRYKCTVCPDYDLCSVCEGKGLHREHSKLVFPTPFGHHSEG
FSHSRWLRKLKHGHFGWPGWEMGPPGNWSPRPPRAGDARPSPTVESASGPSEDPSVDFLK
NIGESVAAALSPLGIEVDIDVEHGGKRSRLTPVSPESSSTEDKGSSQPSSCSSELGKQPG
NGEGTAQSLTEQMKKIVLESVGQPEEQMESDNCSGGDDDWTHLSSKEVDPSTGELQSLQM
PESEGPSSLDPSQEGPTGLKEAALYPHLPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQ
TKNYDIGAALDTIQYSKHPPPL
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtcaccgtgaaggcctaccttctgggcaaggaggaagcgacgcgggagata
cgccgcttcaatttcagcttgggcgacagctccgagcccgaggccgaggcggaggccgcg
gtccgcccggggccctgcgagcggctgctgaggcggttggctgtgctgttccccgcgctg
cggagcggcggcttccaggcgcattaccgggatgaggacggggacttggttgccttttcc
agtgatgaggaactgacaatggccatgtgttacgtgaaggatgacatcttccgcatctac
attaaagagaagaaggagtgccggcgggaccaccggcccccctgtgttcaggaggctcct
cgcagcgcagtgcaccctaacgtgatctgtgatggttgcaatgggcctgtgttgggaact
cgctacaagtgtaccgtgtgtccagactatgacctgtgtagcgtctgtgaggggaagggc
ttgcacagggagcacagtaagcttgtgttccccaccccttttgggcaccactctgaggga
ttctctcacagccgctggctccggaagctgaagcatgggcattttgggtggccaggctgg
gagatgggcccaccagggaactggagcccacgtcctcctcgagctggggatgctcgcccc
agccccacggtggaatcggcttctggtccatcagaggatcccagtgtggatttcctgaag
aacataggggagagtgtggcagccgccctcagccctctgggcatcgaggttgatattgat
gtggagcacggtgggaagagaagccgcctgacacctgtctctccggaaagttccagcaca
gaagacaagggtagttctcagccaagcagctgctcttctgaacttggaaaacagcctggg
aatggtgaaggcactgcccagtctctgacagaacaaatgaaaaagattgtcctggagtct
gtggggcagcctgaggaacagatggagtctgataactgttcaggaggagatgatgactgg
actcatttgtcttctaaagaagtggatccatctacaggggaactccagtctctacagatg
ccagaatcagaaggacccagctctcttgatccttcccaggagggacccacaggactgaag
gaagcagccttgtacccacaccttccaccagaggctgacccccggctgattgagtcgctc
tctcagatgctgtccatggggttctcagatgaaggtggctggctcaccaggctcctacag
accaagaattatgatattggagctgctctggacaccatccagtattcgaagcacccaccg
ccattgtga
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