Perognathus longimembris pacificus (Pacific pocket mouse): 125342557
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Entry
125342557 CDS
T08928
Symbol
Rnf123
Name
(RefSeq) E3 ubiquitin-protein ligase RNF123
KO
K12169
Kip1 ubiquitination-promoting complex protein 1 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125342557 (Rnf123)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125342557 (Rnf123)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125342557 (Rnf123)
Multi subunit type E3
KPC complex
125342557 (Rnf123)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
zf-C3HC4_3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
125342557
NCBI-ProteinID:
XP_048190759
LinkDB
All DBs
Position
26:complement(8850043..8876079)
Genome browser
AA seq
1313 aa
AA seq
DB search
MASKGAGVSFSRKNYRLSSDAEKSRATGIVHEKLLNDYLHQIFPSPDHEPPTTTSRKSLN
FQNLPEHLDQLLQVDNEEEEGQGQVEGRLGPSTVVLDHTGGFEGLLLVDDDLLGVIGHSN
FGTIRSTTCVYKGKWVYEVLISSQGLMQIGWCTINCRFNQEEGVGDTHNSYAYDGNRVRK
WNVTTTNYGKAWAAGDIVSCLIDLDDGTLSFCLNGVSLGTAFENLARGVGMAYFPAISLS
FKESVAFNFGSRPLRYPVAGFRPLQDPPRADLVRAQRLLGCFRAVLTVELDVVEGRLVQK
ESSERQLQGQPTILLTLAHIFHRFAPLLRKVYLVEAVLMSFLLGIVEKGPPEQTQPVVHQ
VLDLLWLFMEDSEIQDCLKQLMMSLLRLYRFSPIVPDLGLQIHYLRLTISILSHEKSRKF
LLSNVLFDMLRSVVFFYIKSPLRVEEAGLQELIPTTWWPHRSSKEGKEGKEVKEETPEER
QRRRAYERGCQRLKKRIEVVEELQVQILKLLLNNKDDNGGEASRYIFLTKFRKFLQENAS
GRGNMPMLCPPEYMVCFLHRLISALRFYWDEYKAGHPRAAHSEEAYIPPQIFYNGKVDYF
DLQRLGGLLSHLRKTLKDDLAAKANIVIDPGELQAASMDDLDEDEEPTPAAAQRPLQALA
IGGALPLPRPGWLSSPTLGRANRFLSTAAVSLMSPRRPLSSSDKVKVRTLTVEQRTREDI
EGSHWNEGLLLGRPPEEPEQPLTENSLLEILDGAIMMYNLSVHQQLGKMVGVSDDVNEYA
MALRDTEDKIRRCPKRRKDILAELTKSQKVFSEKLDHLSRRLAWVHATVYSQEKMLDIYW
LLRVCLRTIEHADRTDSLFAFMPEFYLNVAINSYSALKNYFGSVHSMEELPGYEETLTRL
AAILAKHFADPRIVGTDIRDSLMQALASYVCYPHSLRAVERIPQEQRVAMVRNLLAPYEQ
RPWAQTNWILVRLWRGCGFGYRYTRLPHLLKTKPEDANLPSLQKPCPSILLQQHMADLLR
QGPEVAPSFLNSVLNQLNWAFSEFIGMIQEIQQAAERLERNFVDSRQLKVCATCFDLSVS
LLRVLEMTITLVPDIFLDGAQPTSEMLLRRLAQLLNQVLNRVTAERNLFDRVVTLRLPGL
ESVDHYPILVAVTGILVRLLVHGGASETERATSVLLADPCFQLRSICYLLGQPEPPAPGA
ALPAPDRKRFSLQSYTDYISAEELAQVEQMLAHLTAASAQAAAASLPTSEEDLCPICYAH
PISAVFQPCGHKSCKACINQHLMNNKDCFFCKATIVSVEDWDKAASTSTTSAA
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaagggggccggcgtgtccttctcccgcaagaactataggctgagctcagat
gcggagaaatccagggccaccggcattgtacacgagaaacttctgaatgactacctgcac
caaatctttccctctcctgaccacgagccccccacaaccaccagcaggaaatccctgaac
ttccagaacctgccagagcatttggatcagctactccaggtggacaatgaggaggaggaa
ggccaggggcaggttgaagggcgacttggcccatccactgtggttctggaccacaccgga
ggctttgagggccttcttctggtagatgacgaccttctgggggtgattggccacagcaac
tttggcaccatccgttctaccacctgtgtatataaagggaaatgggtgtacgaggtgctc
atctcctcccaggggctcatgcagattggctggtgcaccatcaactgccgcttcaaccag
gaggagggcgtgggagacacgcacaactcctacgcctatgacggcaaccgagtgcgcaag
tggaacgtgaccactaccaactacggcaaggcgtgggcagcgggggacatcgtgagctgc
ctgattgatttggatgacggaactctgtccttctgcctgaatggcgtctcgctgggcact
gcgtttgagaacctggcccggggcgtgggcatggcctacttcccagccatcagcctgtct
ttcaaggagtctgtggccttcaactttggcagccgtcctttgcgctacccagtggcgggc
ttccggcccctgcaggacccgccgcgtgccgacctggtgcgggcgcagagattgctgggc
tgcttccgggcagtgctcacggtggagctggatgtggtggaagggcggctggttcagaag
gagagctcggagcggcagctgcagggccagcccaccatcctgcttaccctggcccacatc
ttccaccgcttcgccccactcctgcgcaaggtgtacctggttgaggccgtgctcatgagc
ttcctgctgggcatcgtggagaagggcccgccggaacagacgcagcccgtggtccaccag
gtcctggacctcctgtggctcttcatggaagactctgagattcaggactgcctcaagcag
ttgatgatgtctctgctgcggctgtaccggttctcacccatcgttccagatctgggcctg
cagatccactacctgaggctcaccatctccatcctgagccacgagaagtcccgcaagttt
ctgcttagcaacgtcctcttcgacatgctccggtctgtcgtcttcttttacatcaaaagc
cccctgcgcgtggaggaggccggcctgcaggagctcattcccaccacttggtggccccat
cgctccagcaaggagggcaaagaaggcaaggaagtgaaggaggagacccccgaggagcgg
cagagacggcgggcctatgagcggggttgccagaggctcaagaagcgcattgaagtggtg
gaagaattgcaggtgcagatcctcaagctcttgctgaacaataaagacgataacgggggt
gaagcttccagatacatcttcctgaccaagttccgaaagttcctgcaggagaatgccagt
ggccgggggaacatgcccatgctctgcccccccgagtacatggtgtgcttcttgcaccgg
ctgatctcggcgctgcgcttctattgggacgaatacaaagccggccacccccgagctgcc
cacagcgaggaggcttacatccctccgcagatcttctacaatggcaaagtggactacttt
gacctgcagcgccttgggggtctcctctcacacctacgcaagaccctcaaagatgacctg
gccgccaaagccaacatcgtgatcgatcccggggagctccaggcggccagcatggacgac
ctggacgaggacgaggagccgaccccagcagccgcccagcgccccctgcaggccttggcc
atcgggggggccctgcctctcccccggccgggctggctcagttccccgaccctgggccga
gccaaccgcttcctcagcaccgcggccgtgagcctcatgagcccgcgccggcccctgagc
tcctcggacaaagtgaaggtccgcacgctgaccgtggagcagcgcacgcgcgaggacatc
gaaggcagccactggaacgagggcctgctgctggggcgcccccccgaagagcccgagcag
cccctcaccgagaactcgctgctggagatcctggacggcgccatcatgatgtataacctc
agcgtccaccagcagctgggcaagatggtgggcgtgtctgatgacgtcaatgagtacgca
atggctctgagggacacagaggacaaaatccgccggtgccccaagaggcggaaggatata
ctggcagagctcaccaagagccagaaggtgttctcggaaaagctggaccacctgagccgc
cggcttgcgtgggtgcatgccactgtctactcccaggagaaaatgctggacatctactgg
ctgttgcgggtctgcctgcggaccatcgagcacgctgaccgcaccgactcgctcttcgcc
ttcatgcccgagttctacctgaacgtggccatcaacagctacagcgccctcaagaactat
ttcggctctgtccacagcatggaggagctcccaggctacgaagagacgctcacccgactg
gccgccatcctcgccaagcactttgctgacccgcgcatcgtgggcactgacatccgcgac
tcgctgatgcaggccctggccagctacgtgtgctacccacactccctgcgggccgtggag
cggatcccccaggagcagcgcgtcgccatggtgcggaacctcctggccccctacgagcag
cggccctgggcccagaccaactggatcctggttcggctctggaggggctgcgggttcggg
taccgctacacccggctgccacatctgctgaaaaccaagcccgaggatgccaacctgccc
agcctccagaagccctgcccctccatcctgctgcagcagcacatggccgacctcctgagg
cagggcccggaggtggcgcccagcttcctcaacagcgtcctcaaccagctcaactgggcc
ttctccgagttcatcggcatgatccaggagatccagcaggccgccgagcgcctggagcgg
aacttcgtggacagccggcagctgaaggtgtgcgccacgtgcttcgacctgtcggtgagc
ctgctgcgcgtgctggagatgaccatcaccctggtgcccgacatcttcctcgacggcgcg
cagcccacctccgagatgctgctgcggcgcctggcgcagctgctgaaccaggtgctcaac
cgcgtgacggccgagaggaacctcttcgaccgcgtggtcaccctgcggctgcccggcctg
gagagcgtggaccactaccccatcctggtggcggtgaccggcatcctggtgcggctcctg
gtgcacggcggggcctccgagacagagagggccacgtcggtgctcctggccgacccctgc
ttccagctccggtccatatgctatctcctggggcagccagagcccccggcccctggcgcc
gccttacccgcccctgaccggaagcgcttctccctgcagagctatactgattacatcagc
gccgaggagctggcccaagtggaacagatgctggcccacctgacggctgcgtctgcccag
gcagcagcggcatcgctgcccaccagcgaggaggacctctgccccatctgctatgcccac
cccatctctgctgtgttccagccctgtggccataagtcctgcaaagcctgcatcaaccag
cacctgatgaacaacaaggactgcttcttctgcaaagccaccatcgtgtctgtagaggac
tgggacaaggcggccagcacgagtaccacctcggctgcctag
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