Perognathus longimembris pacificus (Pacific pocket mouse): 125343618
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Entry
125343618 CDS
T08928
Symbol
Trpc5
Name
(RefSeq) short transient receptor potential channel 5
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04360
Axon guidance
plop04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
125343618 (Trpc5)
09158 Development and regeneration
04360 Axon guidance
125343618 (Trpc5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plop01009
]
125343618 (Trpc5)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125343618 (Trpc5)
Protein phosphatases and associated proteins [BR:
plop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125343618 (Trpc5)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125343618 (Trpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
LEH
Motif
Other DBs
NCBI-GeneID:
125343618
NCBI-ProteinID:
XP_048192078
LinkDB
All DBs
Position
X:30663430..30802692
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AA seq
976 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLNAVEKGDYATVKQALQEAEIYYN
VNINCMDPLGRSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRK
PSGEKQVPTLMMDTQFSEFTPDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEFKAE
YEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPQKYHDLAKLKVAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFI
KKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIK
EMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAISNILSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETRAIDEPNNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIPSPKSFLYLGSWFNNTFCPKRDPDGRRRRHNLRSFTERHADSLIQNQHYQEVIRNL
VKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKPPKRSFSTSSAELSQ
RDDTNDGSGGARAKSKSVSFNIGCKKKACHGHGTPLIRTMPRASSAQGKSKVESSSKRSF
MGPSFKKLGLLFSKFNGHSSEPSSEPMYTISDGLVQQHYMWQDIRYSQMEKGKAEACSQS
EINLSEVELAEVRGAAQSSECPLACSSSLHCASSICSSNSKLLDSSEDVFETWGEACDLL
MHKWGDGQEEQVTTRL
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggcccagctgtactacaagaaagtcaattactcaccatatagagatcgcatccccctg
caaatcgtgagagctgagacggagctctcagcagaggagaaggccttcctcaatgctgta
gagaagggagactatgccactgtgaagcaggcgctgcaggaggcggagatctactacaat
gtcaacatcaactgcatggatcctctgggtagaagtgccctgcttattgcaattgagaac
gagaacttggagatcatggagctactgctgaaccacagcgtgtatgtgggcgatgcatta
ctctatgccatccgcaaggaagtggtgggggctgtggagcttctgctcagctacagaaag
cccagtggagagaagcaggtgcccactctgatgatggacactcagttctcagaattcaca
ccagacatcactcctatcatgctggctgcccataccaataactatgaaattatcaaattg
cttgtccaaaaacgggtcactattccacgacctcaccagatccgctgcaattgtgtggag
tgtgtgtccagttcagaagtggacagcctgcgccactcccgctcccgactgaacatttat
aaggctctggcaagcccctcactcattgccttatcaagtgaggaccccattctaactgct
ttccgtctgggctgggagctcaaggagctcagcaaggtggagaatgagttcaaggctgaa
tatgaggagctctcccagcagtgcaagctttttgctaaagatctgttggaccaagctcga
agctctcgggaactcgagatcatcctcaaccaccgagatgaccacagtgaagagcttgac
cctcagaagtaccatgacctggccaagctgaaggtggcaatcaaataccaccagaaagag
tttgttgctcagcccaactgccaacagttgcttgccactctgtggtatgatggcttccct
ggatggcggcggaaacactgggtagtcaaacttctgacctgcatgaccattgggttcctg
tttcctatgctgtccatagcctatctgatctcacccaggagcaaccttgggctgttcatc
aaaaaaccttttatcaagttcatctgccacacagcatcctatttgaccttccttttcatg
cttctcctggcttctcagcacatcgtcaggacagaccttcatgtccaagggccgccccca
actgttgtagaatggatgatattgccttgggttctaggtttcatttggggggagattaag
gaaatgtgggatggtggatttactgaatacatccatgactggtggaacttgatggatttt
gcaatgaattccctctacctggcaacaatttccttgaagattgtggcttatgtcaagtat
aatggttctcgtccaagggaggaatgggaaatgtggcacccaactttgattgcagaggca
ctcttcgcaatatccaacattttgagttccttgcgtctcatatcccttttcacagccaat
tcccacttagggcctctacagatctctttaggacgcatgctgcttgatattctcaaattc
ctctttatctactgtctggtactactggcttttgcgaatggactgaaccagctttacttt
tattatgagaccagagctatcgatgagcctaacaactgcaaagggatccggtgtgagaaa
cagaacaatgccttctccacgctctttgaaacccttcagtcactcttctggtctgtattt
ggccttttaaatctctatgtcaccaacgtgaaagccagacatgagttcactgagtttgtt
ggagctaccatgtttgggacgtacaatgtcatctccctggtagtgctgttgaacatgctg
attgctatgatgaacaactcctaccagcttattgctgatcatgctgatattgaatggaag
tttgcaagaacgaagctctggatgagttattttgatgaaggtggtactttaccaccccct
ttcaacatcatccccagtcccaaatcatttctgtatcttggtagctggttcaacaatact
ttctgccccaaaagagatcctgatggtagacggagaaggcacaacttgagaagcttcacg
gagcgacatgctgacagcctgatacaaaatcaacattatcaggaagttatcaggaattta
gtgaaaagatatgtggctgccatgataagaaattccaaaacaaatgaggggttaacagaa
gaaaattttaaggaattaaagcaagacatctccagctttcgatatgaagtgcttgatctc
ttaggaaatagaaagcccccaaagagaagtttttccactagcagcgctgaactctctcag
agggacgataccaatgatggcagtggtggggcccgggccaaatccaagagtgtctctttt
aatataggctgcaaaaagaaggcctgtcatggtcatgggacccctctcatcagaaccatg
ccaagagccagcagtgcccaaggaaagtcaaaagtggagtcatcaagcaaacgctccttc
atgggtccttctttcaagaaactgggtctcttattctccaagtttaatggtcattcgtct
gaacccagttcagagccaatgtacacaatttctgatggactcgttcagcagcactatatg
tggcaggacatcagatattctcaaatggagaaagggaaagcagaggcctgttctcaaagt
gaaattaacctcagtgaggtagaattagctgaagttcggggcgctgctcagagcagtgaa
tgccctctagcttgttccagctctcttcactgtgcatccagcatctgctcctcaaattct
aaacttttagactcctctgaggatgtatttgaaacttggggagaggcttgtgacttgctc
atgcacaaatggggtgacggacaggaagaacaagttacaactcggctctaa
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