KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125350718
Entry
125350718         CDS       T08928                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1-like
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03420  Nucleotide excision repair
plop04066  HIF-1 signaling pathway
plop04110  Cell cycle
plop04114  Oocyte meiosis
plop04120  Ubiquitin mediated proteolysis
plop04141  Protein processing in endoplasmic reticulum
plop04310  Wnt signaling pathway
plop04350  TGF-beta signaling pathway
plop04710  Circadian rhythm
plop05170  Human immunodeficiency virus 1 infection
plop05200  Pathways in cancer
plop05211  Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    125350718
   04120 Ubiquitin mediated proteolysis
    125350718
  09124 Replication and repair
   03420 Nucleotide excision repair
    125350718
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    125350718
   04350 TGF-beta signaling pathway
    125350718
   04066 HIF-1 signaling pathway
    125350718
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    125350718
   04114 Oocyte meiosis
    125350718
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    125350718
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125350718
  09162 Cancer: specific types
   05211 Renal cell carcinoma
    125350718
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    125350718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:plop04121]
    125350718
   03400 DNA repair and recombination proteins [BR:plop03400]
    125350718
Enzymes [BR:plop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     125350718
Ubiquitin system [BR:plop04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   125350718
  Multi subunit type E3
   SCF complex
    Ring finger protein
     125350718
   Cul2 complex
     125350718
   Cul3 complex
     125350718
   Cul4 complex
     125350718
   Cul7 complex
     125350718
   Cul8 complex
     125350718
   Cul9 complex
     125350718
DNA repair and recombination proteins [BR:plop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      125350718
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      125350718
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4_2 zf-RING_11 zf-RING_UBOX zf-C3HC4 zf-RING_5
Other DBs
NCBI-GeneID: 125350718
NCBI-ProteinID: XP_048201500
LinkDB
Position
4:78824633..78824991
AA seq 108 aa
MVAAMDVDTPSGTNNGAGKKRFEVKKWNAVALWAWDIVVNNYAICRNHIMDLYIECQANQ
ASATSEECTVAWGVCNHVFHFHCLSRRLKTRQVCPLDNREWEFQKYGH
NT seq 327 nt   +upstreamnt  +downstreamnt
atggtggcagcgatggatgtggacaccccgagcggcaccaacaacggtgcgggaaagaag
cgctttgaagtgaaaaagtggaatgcagtagccctgtgggcctgggatattgtggttaat
aactatgccatctgcaggaaccatattatggatctttacatagagtgtcaggctaaccag
gcgtcggcgacttccgaggagtgtacggttgcgtggggagtctgtaatcatgtctttcat
ttccattgcctttctcgccggctcaaaacacggcaggtgtgccctttggacaacagagag
tgggagttccaaaagtatggccactag

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