Perognathus longimembris pacificus (Pacific pocket mouse): 125360015
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Entry
125360015 CDS
T08928
Symbol
Setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00310
Lysine degradation
plop01100
Metabolic pathways
plop04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125360015 (Setdb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
125360015 (Setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125360015 (Setdb1)
Enzymes [BR:
plop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
125360015 (Setdb1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
125360015 (Setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
125360015 (Setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5604
Tudor_4
Tudor_5
MBD
SET
Pre-SET
Chromo_MORC2_6th
DUF4537
Chromo
Motif
Other DBs
NCBI-GeneID:
125360015
NCBI-ProteinID:
XP_048213928
LinkDB
All DBs
Position
11:complement(43696674..43733787)
Genome browser
AA seq
1390 aa
AA seq
DB search
MLASGHLLGFLSLPSRCFPSPWLPFSPGVVFARRPTPKQESPGSEERNNKPFEAGSREER
RVLLTEDKSMSSLPGCIGLGAATAAMESEEIAELQQAVVQELGISMEELRQFIDEELEKM
DCVQQRKKQLAELETWVIQKETEVAHVDQLFDDASRAVTNCESLVKDFYSKLGLQYRDSS
SEDESSQPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAV
NKKSSSQDLHKGTLSPMSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYK
VKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKL
RFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSG
QLIKTEWEGTWWKSRVEEVDGSLVKILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEK
KQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPMEPPQPIAPSVPPVPSVPPAPPA
VPPLSPQAGDNESLESQLAQSRKQVAKKSTSCRPGSVGSGHSSPTSPPHSENASGGKPGI
NQTYRSPLGSTTSAPALSAPQLLPASDELPIVSTTSAPAPPAPPGPPAPPAFHGMLERAP
AEPSYRAPMEKLFYLPHVCSFTCLSRIRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNR
KMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYI
LDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKS
KCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQH
GLQVRLQLFKTQNKGWGIRCLDDIARGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDH
IESVENFKEGYESDIPCSSDSSGVDMKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTS
SVWRSYATRRQTRGQKENGPTETTSKDSRPPDLGPPHIPIPPSVSGGGCNPPSSEETPKN
KVASWLSCNSVSEGGFADSDSRSSFKTSEAGEGRNGGRGEAEKVSTSVLGMKEEGDIKQA
KKEDPDDRNKVSVVTESSRNYGYNPHVKAEGARRPSSKTNMHQSRRHMASAHSNPDDVLT
LSSSTESEGESGTSRKPTAGQTSTTAVDSDDIQTISSGSEGEDFEDKKNMSGPTKRQVAV
KSTRGFALKSTHGIAIKSTNMASVDKGESTPVRKNTRQFYDGEESCYIIDAKLEGNLGRY
LNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCC
GAIECRGRLL
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcttccggccatctccttgggttcctttcccttccctcacgctgtttcccctcc
ccctggctccctttctcgcccggtgttgtttttgctcggaggccgacccctaaacaggag
agtccaggatctgaggagaggaacaacaagccattcgaggctgggagcagggaggagagg
cgagtacttctgaccgaggacaaaagcatgtcctccctccctggctgcattggtttgggt
gcagcaacagctgcaatggaatctgaagagattgcagagctacagcaggcagtggttcag
gagctgggtatctctatggaggaacttcggcagttcattgatgaagaacttgaaaagatg
gactgtgtacagcaacgcaagaagcaactagcagagttggagacatgggtaatacagaaa
gaaactgaagttgctcatgttgaccagctctttgatgatgcatcaagggcagtgactaat
tgtgagtctttggtgaaggacttttactctaagctgggactccagtaccgtgacagtagc
tctgaggatgaatcttcccagcccacagaaataattgagattcctgatgaagatgatgat
gtcctcagtattgattcaggtgatgctgggagtagaactcccaaagaccagaagcttcgt
gaagctatggctgccttaagaaaatcagctcaagatgtccagaagttcatggatgctgtc
aacaagaagagcagttcccaagatctgcataaaggaactttgagtcccatgtctggggaa
ctgagcaaagatggtgacctgatagtcagtatgcggattttgggcaagaagaggaccaag
acatggcacaaaggcacccttattgctatccagacagttgggccagggaagaaatacaaa
gtgaaatttgacaacaaaggaaagagtctgctgtcggggaaccatattgcctatgattac
caccctcctgctgacaagctatatgtgggcagtcgtgtggtagccaagtacaaagatggg
aatcaggtctggctttatgctggcattgtagctgagacaccaaacgtcaaaaacaagctc
aggtttctcattttctttgatgatggctatgcttcctatgttacacagtcagaactgtat
cccatttgccggccattgaaaaagacttgggaggacatagaagacatttcctgccgagac
ttcatagaggaatatatcactgcctaccccaaccgtcccatggtgctgctcaagagcggc
cagcttatcaagactgaatgggaagggacatggtggaagtcccgagttgaggaagtagat
ggcagcctagtcaagatcctcttcctggatgataaaagatgtgagtggatctatcgaggc
tctacacgactagaacccatgtttagcatgaaaacatcttcagcctctgcactggagaaa
aagcaagggggacagctcaggacacgtccaaatatgggtgctgtgaggagcaaaggtcct
gttgtccaatacactcaggatctgactagtactggaacccagttcaagccaatggagcct
ccacagcccattgctccatctgttccaccagttccatctgtgccacctgctccacctgcg
gttccacctctgtccccccaagcaggtgacaatgaaagcttggaaagccagcttgctcag
tcacggaagcaggtagccaaaaagagcacatcatgtcgaccaggatctgtgggctctggt
cattcctctcctacatcccctccacacagtgaaaatgcctctggtgggaaacctgggatt
aaccagacatacagatcacctttgggctcaacaacctcggcaccagcactttcagctcct
cagttgcttccagccagtgatgaattaccaatagtctcaacaacctctgctccagcaccc
ccagctcctcctgggcctccagccccaccagccttccatggcatgcttgagcgtgcccct
gcagaaccctcctaccgtgccccaatggagaagcttttctacttacctcatgtttgtagc
tttacttgtctgtctcggatcagacctatgaggaatgagcagtaccgcggcaagaaccct
ctgttggtcccactactgtatgacttccggaggatgactgctcgacgccgagtcaaccgc
aagatgggctttcatgtaatctacaagacaccctgtggcctctgcctacggacaatgcag
gagatcgaacgctacctatttgaaactggctgtgactttcttttcctggagatgttttgt
ttggatccatatgttcttgtggacagaaagtttcaaccctataaacctttttactatatt
ttggatatcacctatggcaaagaagatgttcccctgtcctgtgttaatgagattgacaca
acgcccccaccccaggtggcctacagcaaagagcgaatccctggcaagggtgttttcatt
aacacaggccctgaatttctggttggctgtgactgcaaggatgggtgtcgggacaagtcc
aaatgtgcctgccatcaactaactatccaggctacagcatgtacgccagggggccaaatc
aaccctaactctggctaccagtacaagagactagaagaatgtctgcccacaggggtttat
gagtgtaacaaacgctgcaaatgtgacccaaacatgtgtacaaatcggttggtacagcat
ggactacaggttcgactacagctatttaagacacagaacaaaggctggggtatccgctgc
ttggatgacattgccagaggctcttttgtctgtatttatgcaggcaaaatcctgacggat
gactttgcagacaaagaaggcctggagatgggtgatgagtactttgcaaatctagaccat
attgagagtgtagagaacttcaaggaaggatatgaaagtgatataccctgttcctctgac
agcagtggtgttgacatgaaggaccaggaagatggcaatagtggtactgaggaccctgag
gagtccaatgatgatagctcagatgataacttctgtaaggatgaggacttcagcaccagc
tcagtgtggcgtagctatgctacccggaggcagacccgaggccaaaaagagaatggaccc
actgaaaccacttccaaggattcacgccctccagaccttgggcccccacatattcccatc
cctccttcagtctctggagggggctgcaatccaccttcctctgaagagacacccaagaat
aaggtggcctcatggttgagctgcaacagtgtcagtgaaggtggttttgctgactcagat
agccgttcatcctttaagactagtgaagcaggggagggtcggaatggaggccgaggggag
gctgagaaggtctctacttcagtactgggcatgaaggaagaaggagacatcaaacaggcc
aaaaaagaggaccctgatgatcgaaacaaggtgtcagtagttacagaaagttctcggaat
tatggttataatcctcatgtgaaggctgaaggagctcgccgtccatctagtaagactaat
atgcaccagagtcggcggcacatggcctctgcccattccaaccctgatgatgtcctgacg
ctgtccagcagcacagaaagtgagggggaaagtggcaccagccgcaagcccactgctggg
cagacctcaaccacagcagttgacagtgatgatatccaaaccatctcctctggctcggaa
ggggaggactttgaggacaagaagaacatgtctggtccaacaaagcgccaggtggcagtt
aaatcaacccgaggcttcgctcttaaatcaacccatggaattgccattaagtcaaccaac
atggcctctgtggacaagggagaaagtacacctgttcgaaagaacacacgccaattctat
gatggtgaagagtcttgctacatcattgatgccaagctggaaggaaacctgggccgctac
ctcaatcacagttgcagtcccaacctgtttgtccagaatgtcttcgtggacacccacgat
cttcgcttcccctgggtcgccttctttgccagcaagagaatccgagctgggaccgaactt
acttgggactacaactatgaggtgggcagtgtggaaggcaaggagctgctctgctgctgt
ggagccatcgagtgcagaggccgtcttctttag
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integrated database retrieval system
